Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,591,620 | T→A | 7.8% | L258* (TTG→TAG) ‡ | PP_3169 → | membrane protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,591,620 | 0 | T | A | 7.8% | 200.1 / 6.5 | 64 | L258* (TTG→TAG) ‡ | PP_3169 | membrane protein |
Reads supporting (aligned to +/- strand): ref base T (31/28); new base A (2/3); total (33/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.67e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 |
GGTCTGGCGGGTGCTGGCCAAGACCCCGAATGGCGATTACTACGAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATGGGGATCCCGGGGAATTACACCTTTCGCTTCAACATGGCTCAGCGCGATCATCAAGGGCAGTGGATGGTCGGTGT > NC_002947/3591471‑3591767 | ggTCTGGCGGGTGCTGGCCAAGACCCCGAATGGCGATTACTACGAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCtt < 1:1072504/150‑1 (MQ=255) tGGCGGGTGCTGGCCAAGACCCCGAATGGCGATTACTACGAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTgcgc < 2:238526/150‑1 (MQ=255) ttatctGCTGGCCAAGACCCCGAATGGCGATTACTACGAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATCACCCGTTGCACCAGCGCTTGCGCTg > 2:184989/6‑150 (MQ=255) gCGGGTGCTGGCCAAGCCCCCGAATGGCGATTACTACGAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAAATGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTg < 1:228388/150‑1 (MQ=255) gggTGCTGGCCAAGACCCCGAATGGATCATACTACGAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCAAGCGCTGGt < 1:360555/150‑1 (MQ=255) gCTGGCCAAGACCCCGAAGGGCGATTACTACGAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCAc < 2:304594/150‑1 (MQ=255) cTGGCCAAGACCCCGAATGGCGATTACTACGAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCAcc > 1:255399/1‑150 (MQ=255) gCCAAGACCCCGAATGGCGATTACTACGAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGAt < 1:1409268/150‑1 (MQ=255) gCCAAGACCCCGAATGGCGATTACTACGAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGAt < 2:50959/150‑1 (MQ=255) cAAGACCCCGAATGGCGATTACTACGAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCATCGCAAGCGCTGGt < 2:59776/140‑1 (MQ=255) cAAGACCCCGAATGGCGATTACTACGAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCAAGCGCTgg > 2:422918/1‑139 (MQ=255) cAAGACCCCGAATGGCGATTACTACGAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCAAGCGCTgg < 1:422918/139‑1 (MQ=255) cAAGACCCCGAATGGCGATTACTACGAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCAAGCGCTGGt > 1:59776/1‑140 (MQ=255) aCCCCGAATGGCGATTACTACGAAGGCATCAGCAGCGTGCTCGATCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTgg < 1:305495/150‑1 (MQ=255) aCCCCGAATGGCGATTACTACGAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTgg < 1:264525/150‑1 (MQ=255) ccGAATGGCGATTACTACGAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTg > 2:793146/1‑150 (MQ=255) cGAATGGCGATTACTACGAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTg > 1:931579/1‑130 (MQ=255) cGAATGGCGATTACTACGAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTg < 2:931579/130‑1 (MQ=255) gAATGGCGATTACTACGAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTg > 2:1322289/1‑129 (MQ=255) gAATGGCGATTACTACGAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTg < 1:1322289/129‑1 (MQ=255) gCGATTACTACGAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCtt < 2:1329983/118‑1 (MQ=255) gCGATTACTACGAAGGCATCAGCAGAGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCtt > 1:1329983/1‑118 (MQ=255) ctacGAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGAt > 2:449032/1‑150 (MQ=255) cGAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTgg > 2:206541/1‑150 (MQ=255) gAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGc > 1:338541/1‑150 (MQ=255) aTCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCAcc < 2:1421264/114‑1 (MQ=255) aTCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCAcc > 1:1421264/1‑114 (MQ=255) cagcGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACtggt < 2:942400/150‑1 (MQ=255) agcGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTGACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACtggtg < 1:683081/150‑1 (MQ=255) cGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTggtggt < 1:793146/150‑1 (MQ=255) aCCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTg > 2:361787/1‑91 (MQ=255) aCCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTg < 1:361787/91‑1 (MQ=255) cAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTAt > 2:224246/1‑114 (MQ=255) cAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTAt < 1:224246/114‑1 (MQ=255) cccGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCAc > 1:1126584/1‑134 (MQ=255) cccGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCAc < 2:1126584/134‑1 (MQ=255) cccGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATgggg > 1:1036944/1‑150 (MQ=255) ccGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATGGGGa > 2:506001/1‑150 (MQ=255) gAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATGGGGATc > 1:1266662/1‑150 (MQ=255) gAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATGGGGATc > 2:484235/1‑150 (MQ=255) gCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATGGGGATCCCggg < 1:206541/150‑1 (MQ=255) gCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTCGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATGGGGATCCCggg < 2:255399/150‑1 (MQ=255) aaCGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATGGGGATCCCGGGGa > 1:976063/1‑150 (MQ=255) aaCGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATGGGGATCCCGGGGa > 1:444751/1‑150 (MQ=255) aCGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATGGGGATCCCGGGGaa > 2:123424/1‑150 (MQ=255) cGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTNGCGACGNACTGGTGGTCACCGACCTGCGCATGGGGATCCCGGGGAAt < 1:1110527/150‑1 (MQ=255) cTTGTCGCGCAACTTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGGTGGTTTACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTTGTGGTCACCGACCTGCGCATGGGGATCCCGGGGAATTa < 1:617066/150‑1 (MQ=255) cTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATGGGGATCCCGGGGAATTACACCTTTCGCTTc > 1:904285/1‑150 (MQ=255) ggAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGAcc > 1:1011858/1‑110 (MQ=255) ggAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGAcc < 2:1011858/110‑1 (MQ=255) ggAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATGGGGATCCCGGGGAATTACACCTTTCGCTTCaa > 2:1291656/1‑150 (MQ=255) gCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATGGGGATCCCgg < 1:874485/115‑1 (MQ=255) gCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATGGGGATCCCgg > 2:874485/1‑115 (MQ=255) aCTGAACGATGACCCGTTGCAACAGCGCTTGCGATGGTTCACCGATGACGGGCGTTGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATGGGGATCCCGGGGAATTACACCTTTCGCTTCAACATGGCTCAGCGCGa > 1:536552/1‑150 (MQ=255) gATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATGGGGATCCCGGGGAATTACACCTTTCGCTTCAACATTGCTCAGCGCGATCATCaa > 2:178914/1‑150 (MQ=255) cccGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCa < 1:932759/77‑1 (MQ=255) cccGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCa > 2:932759/1‑77 (MQ=255) cccGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATGGGGATCCCGGGGAATTACACCTTTCGCTTCAACATGGCTCAGCGCGATCATCAAGGGCa > 1:34673/1‑150 (MQ=255) gTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCa < 1:430683/74‑1 (MQ=255) gTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCa > 2:430683/1‑74 (MQ=255) gcAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATGGGGATCCCGGGGAATTACACCttt > 2:978962/2‑106 (MQ=255) ccAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATGGGGATCCCGGGGAATTACACCttt < 1:978962/106‑1 (MQ=255) cAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATGGGGATCCCGGGGAATTACACCTTTCGCTTCAACATGGCTCAGCGCGATCATCAAGGGCAGTGGATGGTc < 1:123424/150‑1 (MQ=255) cAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATGGGGATCCCGGGGAATTACACCTTTCGCTTCAACATGGCTCAGCGCGATCATCAAGGGCAGTGGATGGTc > 1:689464/1‑150 (MQ=255) aGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATGGGGATCCCGGGGAATTACACCTTTCGCTTCAACATGGCTCAGCGCGATCATCAAGGGCAGTGGATGGTCg < 1:184989/150‑1 (MQ=255) cTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATGGGGATCCCGGGGAATTACACCTTTCGCTTCAACATGGCTCAGCGCGATCATCAAGGGCAGTGGATGGTCGgtgt < 2:1266662/150‑1 (MQ=255) cTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATGGGGATCCCGGGGAATTACACCTTTCGCTTCAACATGGCTCAGCGCGATCATCAAGGGCAGTGGATGGTCGgtgt > 2:1126457/1‑150 (MQ=255) | GGTCTGGCGGGTGCTGGCCAAGACCCCGAATGGCGATTACTACGAAGGCATCAGCAGCGTGCTCGACCAGCAACCACCCGAAATGCAACGCTTGTCGCGCAACCTGGAACTGGCGCAAGCACTGAACGATGACCCGTTGCACCAGCGCTTGCGCTGGTTCACCGATGACTGGCTGCGTTATGACCAGATTGGCGACGCACTGGTGGTCACCGACCTGCGCATGGGGATCCCGGGGAATTACACCTTTCGCTTCAACATGGCTCAGCGCGATCATCAAGGGCAGTGGATGGTCGGTGT > NC_002947/3591471‑3591767 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |