Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,612,162 | A→T | 10.1% | I522N (ATT→AAT) | mcoA ← | Mn(II) copper oxidase A |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,612,162 | 0 | A | T | 10.1% | 173.5 / 10.5 | 60 | I522N (ATT→AAT) | mcoA | Mn(II) copper oxidase A |
Reads supporting (aligned to +/- strand): ref base A (25/28); new base T (3/3); total (29/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.22e-01 |
CGGGCCTTTGAACTCACCGCTGTTACCGGCAATCTCCCGCACCACGGCGAACTTGAAGTAGCGCGACACCGAGCCGTTGAGGAGACGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGACGTCATAGTCACGGTTACCCCAAGGCATGGCTGAACCGCTTGGGAAGCGCAGGTTGAC > NC_002947/3612017‑3612310 | cGGGCTTTCGAACTCACCGCTGTTACCGGCAATCTCCCCCACCCCGGGAGTGAAAAAATCACCGGGGGCCGACCCGTTGAGGAGACGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTg < 1:525522/150‑1 (MQ=255) cTTTGAACTCACCGCTGTTACCGGCAATCTCCCGCACCACGGCGAACTTGAAGTAGCGCGACAACGAGCCGTTGAGGAGACGGAAACGGTAACGGCGCGCACGCAGCTGAAGGCTGGGCTGATACTGCCAGTTGACAGGAATATGGTCAg > 2:1360/1‑150 (MQ=255) tttGAACTCACCGCTGTTACCGGCAATCTCCCGCACCACGGCGAACTTGAAGTAGCGCGACACCGAGCCGTTGAGGAGACGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGc > 2:1186566/1‑150 (MQ=255) tGAACTCACCGCTGTTACCGGCAATCTCCCGCACCACGGCGAACTTGAAGTAGCGCGACACCGAGCCGTTGAGGAGACGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGa < 2:1375344/150‑1 (MQ=255) aaCTCACCGCTGTTACCGGCAATCTCCCGCACCACGGCGAACTTGAAGTAGCGCGACACCGAGCCGTTGAGGAGACGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAgg < 1:1399259/150‑1 (MQ=255) aCTCACCGCTGTTACCGGCAATCTCCCGCACCACGGCGAACTTGAAGTAGCGCGACACCGAGCCGTTGAGGAGACGGAAACGGAAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGa < 1:574259/150‑1 (MQ=255) cTCACCGCTGTTACCGGCAATCTCCCGCACCACGGCGAACTTGAAGTAGCGCGACACCGAGCCGTTGAGGAGACGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGaa < 1:1259202/150‑1 (MQ=255) tCACCGCTGTTACCGGCAATCTCCCGCACCACGGCGAACTTGAAGTAGCGCGACACCGAGCCGTTGCGGAGACGGAAACGGTAACTGCGTGCACGCACCTTGAGCGTGGGCTTGTACTACCAGTTGACCAGACTCTGGTCAGCGAGGAAg > 2:268436/1‑150 (MQ=255) gTTACCGGCAATCTCCCGCACCACGGCGAACTTGAAGTAGCGCGACACCGAGCCGTTGAGGAGACGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGccgtccgt < 2:647241/150‑1 (MQ=255) ttACCGGCAATCTCCCGCACCACGGCGAACTTGAAGTAGCGCGACACCGAGCCGTTGAGGAGACGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCgtg < 1:814965/150‑1 (MQ=255) aaTCTCCCGCACCACGGCGAACTTGAAGTAGCGCGACACCGAGCCGTTGAGGAGACGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACgg < 1:268436/150‑1 (MQ=255) ctcCCGCACCACGGCGAACTTGAAGTACCGCGACACCGAGCCGTTGAGGAGACGGAAACGGTAACTGCGCGCACGCATCTTGAGCCTGGGCTTGTACTGCCCGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGtt < 1:33058/150‑1 (MQ=255) tcCCGCACCACGGCGAACTTGAAGTAGCGCGACACCGAGCCGTTGAGGAGACGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGATTCTGGTCaac > 2:1099223/1‑120 (MQ=255) tcCCGCACCACGGCGAACTTGAAGTAGCGCGACACCGAGCCGTTGAGGAGACGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGATTCTGGTCaac < 1:1099223/122‑3 (MQ=255) tcCCGCACCACGGCGAACTTGAAGTAGCGCGACACCGAGCCGTTGAGGAGACGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTg > 1:286561/1‑150 (MQ=255) accacGGCGAACTTGAAGTAGCGCGACACCGAGCCGTTGAGGAGACGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACcac < 2:286561/150‑1 (MQ=255) cacGGCGAACTTGAAGTAGCGCGACACCGAGCCGTTGAGGAGACGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGt < 2:1163694/140‑1 (MQ=255) cacGGCGAACTTGAAGTAGCGCGACACCGAGCCGTTGAGGAGACGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGt > 1:1163694/1‑140 (MQ=255) gAAGTAGCGCGACACCGAGCCGTTGAGGAGACGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGa < 2:361468/104‑1 (MQ=255) gAAGTAGCGCGACACCGAGCCGTTGAGGAGACGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGa > 1:361468/1‑104 (MQ=255) aaGTAGCGCGACACCGAGCCGTTGAGGAGACGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATc > 1:823212/1‑93 (MQ=255) aaGTAGCGCGACACCGAGCCGTTGAGGAGACGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATc < 2:823212/93‑1 (MQ=255) gcgACACCGAGCCGTTGAGGAGACGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGACGAACGCTTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAgg > 1:1379243/1‑150 (MQ=255) cGTTGAGGAGACGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGTGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCaa < 2:150280/150‑1 (MQ=255) gTTGAGGAGACGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACggg > 2:773940/1‑106 (MQ=255) gTTGAGGAGACGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACggg < 1:773940/106‑1 (MQ=255) gagaCGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAg < 2:1350754/150‑1 (MQ=255) gagaCGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAg > 2:400817/1‑150 (MQ=255) gagaCGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAg > 1:1320508/1‑150 (MQ=255) aCGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGtt > 2:1082960/1‑150 (MQ=255) gAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGAc > 2:1344355/1‑150 (MQ=255) aCGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGACGTc < 1:426248/150‑1 (MQ=255) tAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGACGTCATAg < 1:1082960/150‑1 (MQ=255) cgcgcACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGt < 2:551725/118‑1 (MQ=255) cgcgcACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGt > 1:551725/1‑118 (MQ=255) cacgcacCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGACGTCATAGTCACGGTTAc < 2:619879/150‑1 (MQ=255) acCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGACGTCATAGTCACGGTTACCCCaa > 1:118218/1‑150 (MQ=255) ccTTGAGACTGGGCTTGTACTGCCAGTTGGCCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGACTTTGTCGGCAATCACCAGGCTGACGTCATAGTCGCGGTTACCCCAAg < 2:195918/150‑1 (MQ=255) cTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGACGTCATAGTCACGGTTACCCCAAgg > 2:1140532/1‑150 (MQ=255) ttGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATTCCAGGCTTTGTCGGCAATCACCAGGTTGACGTCATAGTCACGGTTACCCCAAGGc > 2:1404027/1‑150 (MQ=255) tGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGACCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGACGTCATAGTCACGGTTACCCCAAGGCa < 1:1186566/150‑1 (MQ=255) ccTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGACGTCATAGTCACGGTTACCCCAAGGCATGGc > 1:459057/1‑150 (MQ=255) tGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGACGTCATAGTCACGGTTACCCCAAGGCATGGCTg > 2:646069/1‑150 (MQ=255) tGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGACGTCATAGTCACGGTTACCCCAAGGCATGGCTg > 2:645548/1‑150 (MQ=255) gCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGACGTCATAGTCACGGTTACCCCAAGGCATGGCTGAAc > 2:1418033/1‑150 (MQ=255) tGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGAc > 1:1102713/1‑107 (MQ=255) tGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGAc < 2:1102713/107‑1 (MQ=255) tcgctGACCAGATTCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATc < 2:268088/89‑1 (MQ=255) tcgctGACCAGATTCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATc > 1:268088/5‑93 (MQ=255) tcgctGACCAGATTCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGACGTCATAGTCACGGTTACCCCAAGGCATgt < 2:881674/129‑2 (MQ=255) tcgctGACCAGATTCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGACGTCATAGTCACGGTTACCCCAAGGCATgt > 1:881674/5‑132 (MQ=255) cAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGACGTCATAGTCACGGTTACCCCAAGGCATGGCTGAACCGCTTGGGAAg > 2:1082823/1‑150 (MQ=255) gACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGACGTCATAGTCACGGTTACCCCAAGGCATGGCTGAACCGCTTGGGAAGCGCAg < 1:645548/150‑1 (MQ=255) gACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGACGTCATAGTCACGGTTACCCCAAGGCATGGCTGAACCGCTTGGGAAGCGCAg < 1:646069/150‑1 (MQ=255) aCCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGt > 2:586291/1‑79 (MQ=255) aCCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGt < 1:586291/79‑1 (MQ=255) cAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGACGTCATAGTCACGGTTACCCCAAGGCATGGCTGAAc < 2:299411/131‑1 (MQ=255) cAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGACGTCATAGTCACGGTTACCCCAAGGCATGGCTGAAc > 1:299411/1‑131 (MQ=255) cAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGACGTCATAGTCACGGTTACCCCAAGGCATGGCTGAACCGCTTGGGAAGCGCAGGtt > 1:128680/1‑150 (MQ=255) aGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGACGTCATAGTCACGGTTACCCCAAGGCATGGCTGAACCGCTTGGGAAGCGCAGGTTg < 2:1320508/150‑1 (MQ=255) aaTCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGACGTCATAGTCACGGTTACCCCAAGGCATGGCTGAACCGCTTGGGAAGCGCAGGTTGAc < 2:118218/150‑1 (MQ=255) | CGGGCCTTTGAACTCACCGCTGTTACCGGCAATCTCCCGCACCACGGCGAACTTGAAGTAGCGCGACACCGAGCCGTTGAGGAGACGGAAACGGTAACTGCGCGCACGCACCTTGAGCCTGGGCTTGTACTGCCAGTTGACCAGAATCTGGTCAGCGAGGAAGCCGTCCGTGTTGAACGGGTTGAACCACAGCTGGCCATTGGCATCCCAGGCTTTGTCGGCAATCACCAGGTTGACGTCATAGTCACGGTTACCCCAAGGCATGGCTGAACCGCTTGGGAAGCGCAGGTTGAC > NC_002947/3612017‑3612310 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |