| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,742,010 | T→C | 12.2% | intergenic (‑35/+378) | PP_3305 ← / ← PP_3306 | TerC family membrane protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,742,010 | 0 | T | C | 12.2% | 163.5 / 8.2 | 63 | intergenic (‑35/+378) | PP_3305/PP_3306 | TerC family membrane protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (28/27); new base C (3/5); total (31/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.08e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGAGCACACCTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAGCTAAAACGCTTGCAGTGAAAAACTAACTTCGC > NC_002947/3741861‑3742155 | ggAGCACACCTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTAt < 2:774274/150‑1 (MQ=255) cgatctccTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCATAGTTGTTCAACTACGa < 1:306405/144‑1 (MQ=255) aGCACACCTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGa < 2:815236/150‑1 (MQ=255) aGCACACCTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCATAGTTGTTCAACTACGa < 1:736291/150‑1 (MQ=255) acCTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGATATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCg > 1:349887/1‑150 (MQ=255) acCTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCg > 2:392146/1‑150 (MQ=255) ccTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGa > 2:826513/1‑150 (MQ=255) cTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTAATAGATGTACATCTACGAcacatcg > 2:306405/1‑144 (MQ=255) tAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACa < 1:935570/150‑1 (MQ=255) aGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATg < 1:826513/150‑1 (MQ=255) tCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCATAGTTGTTCAACTACGACtataca > 2:1086822/1‑140 (MQ=255) tCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCATAGTTGTTCAACTACGACtataca < 1:1086822/145‑6 (MQ=255) gcgcCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCATAGTTGTTCAACTACGa < 1:709562/134‑1 (MQ=255) gcgcCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTAACAAGAACG‑TCTTGGTAGAGATACGTAATAAGGGCAGACATGAGCCCCTCCTGTATAGGAGTAGTTGAACAAATATGACTCCGACATGGCGGta > 2:1097291/1‑150 (MQ=255) gcCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGtata > 1:1285690/1‑150 (MQ=255) cAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGt < 1:861750/150‑1 (MQ=255) aacaGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAAc < 2:1115371/135‑1 (MQ=255) aacaGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAAc > 1:1115371/1‑135 (MQ=255) gAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCa < 1:1150205/150‑1 (MQ=255) gAAAGCCAAAGCCAGAGGTCAGTACCAAGAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATaa > 2:387711/1‑150 (MQ=255) ccaaagccaGAGGTCAGTACCAAGAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAAt > 1:92521/1‑150 (MQ=255) aaagccaGAGGTCAGTACCAAGAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAAttt > 1:513236/1‑150 (MQ=255) gTCAGTACCAAGAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGcgcg > 2:1073737/1‑150 (MQ=255) tACCAAG‑ACGTTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAg > 1:242220/1‑150 (MQ=255) tACCAAG‑ACGTTCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAg > 1:674825/1‑150 (MQ=255) actaaGAACG‑TCTTGTTAGAGATACGGACTAAGGGCAGACATTTGCCCCTCTTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGTTTCCGGTGTCACTAATAAAGAATTTATTGAGCGCGAGTAgg < 2:1002795/147‑1 (MQ=255) aaGAACG‑TCTTGGTAGAGATACGTACTNAGGGCAGACATGNGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTg > 1:1355131/1‑150 (MQ=255) gAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCa > 1:214235/1‑150 (MQ=255) g‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCATAGTTGTTCAACTACGAc > 1:434061/1‑71 (MQ=38) g‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCATAGTTGTTCAACTACGAc < 2:434061/71‑1 (MQ=37) ttGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATAGCGGTATAACCTTCAAAGATGATGAGCTGGGCCGATAGAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGaa < 1:387711/150‑1 (MQ=255) ggTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGaaaa < 1:270110/150‑1 (MQ=255) gagaTACGTACTAAGGGCAGATATGAGCCCCGCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGCGACGCTGAACTGCACTAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACAtt < 2:349887/150‑1 (MQ=255) gagaTACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACAtt < 2:674825/150‑1 (MQ=255) cGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACaaa < 2:1060910/150‑1 (MQ=255) aaGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGCCTCCGACATGGCGGTATAACCGTCAGACGCGCCCGGCGTCAAGAAGCTACGACGAATCCGGCGCGATTGGTTTGCAAGTAGAAAACATTTACAAATCTTGt < 1:1097291/150‑1 (MQ=255) gCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATc > 2:622569/1‑103 (MQ=255) gCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATc < 1:622569/103‑1 (MQ=255) gCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCAt < 2:92521/150‑1 (MQ=255) aTGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAg > 1:226289/1‑150 (MQ=255) tcctGGATAGTCGTATTTGAACAACTATGCCTCCGAGATCGCGGTATAACCGTCAGAGGGGACCGGCTTCACGAATAACGAATTTATCGAGCGCGAGTACGCTGCAAGTAGAAAACATGTACAAATATTGTCCATGACAAGCTAAAACGc < 2:242482/150‑1 (MQ=255) cctGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAGCTAAAACGCt < 2:1355131/150‑1 (MQ=255) ctGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAGCTAAAACGCtt < 2:1285690/150‑1 (MQ=255) gTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAGCTAAAACGCtaga > 1:242482/1‑147 (MQ=255) tataGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTa > 2:1167528/1‑105 (MQ=255) tataGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTa < 1:1167528/105‑1 (MQ=255) tataGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAGCTAAAACGCTTGCa < 2:242220/150‑1 (MQ=255) gTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAGCTAAAACGCTTGCAGTGa > 2:444990/1‑150 (MQ=255) tCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTc > 2:98138/1‑44 (MQ=255) tCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTc < 1:98138/44‑1 (MQ=255) tCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCagag > 2:185669/1‑48 (MQ=255) tCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCagag < 1:185669/48‑1 (MQ=255) tCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTc < 2:459721/122‑1 (MQ=255) tCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTc > 1:459721/1‑122 (MQ=255) tCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAGCTAAAACGCTTGCAGTGaa > 2:1180952/1‑150 (MQ=255) gTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACaaa > 1:8807/1‑110 (MQ=255) gTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACaaa < 2:8807/110‑1 (MQ=255) gTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAGCTAAAACGCTTg < 2:1104104/138‑1 (MQ=255) gTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAGCTAAAACGCTTg > 1:1104104/1‑138 (MQ=255) gTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAGCTAAAACGCTTGCAGTGAAAaact > 1:911750/1‑150 (MQ=255) ttGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAACCATTTACAAATCTTGTACATGCCAATCTAAAACGCTTGCAGTGAAAaacta < 1:392146/150‑1 (MQ=255) aacTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTg < 1:883046/108‑1 (MQ=255) aacTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTg > 2:883046/1‑108 (MQ=255) acTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAACCTAAAACGCTAACAGTGAAAAACTAACTTCGc > 2:329203/1‑150 (MQ=255) | GGAGCACACCTAAGTCAAGCGCCAACAGTGTTAGCACAACAGCGAAAAAGGAAAGCCAAAGCCAGAGGTCAGTACCAAGAACG‑TCTTGGTAGAGATACGTACTAAGGGCAGACATGAGCCCCTCCTGTATAGTCGTAGTTGAACAACTATGACTCCGACATGGCGGTATAACCGTCAGAGGGGCCCGGCGTCACGAATAAAGAATTTATCGAGCGCGAGTAGGCTGCAAGTAGAAAACATTTACAAATCTTGTCCATGACAAGCTAAAACGCTTGCAGTGAAAAACTAACTTCGC > NC_002947/3741861‑3742155 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |