| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,880,419 | C→G | 9.2% | A737G (GCC→GGC) | mexF → | multidrug RND transporter MexF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,880,419 | 0 | C | G | 9.2% | 115.7 / 2.7 | 40 | A737G (GCC→GGC) | mexF | multidrug RND transporter MexF |
| Reads supporting (aligned to +/- strand): ref base C (17/19); new base G (2/2); total (19/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.15e-01 | |||||||||||
TCTGCAAATCGAAGACCGTGGCAACCTGGGTTACGAAGCGCTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTGGCGATCACCGACATCTTCGACACCCTGCAGGTTTACCTGGGCTCGCTGTACACCAACGACTTCAACCGCTTTGGCCGCACTTACCAGGTCAACGTCCAGGCCGAGCAGC > NC_002947/3880279‑3880565 | tCTGCAAATCGAAGACCGTGGCAACCTGGGTTACGAAGCGCTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGa > 1:1099886/1‑150 (MQ=255) gCAAATCGAAGACCGTGGCAACCTGGGTTACGAAGCGCTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGGCGGCATCGActt < 1:1098605/150‑3 (MQ=255) cAAATCGAAGACCGTGGCAACCTGGGTTACGAAGCGCTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCgg > 1:142183/1‑150 (MQ=255) aaaTCGAAGACCGTGGCAACCTGGGTTACGAAGCGCTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTCCCAGATCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCAt > 1:799304/1‑142 (MQ=255) aaaTCGAAGACCGTGGCAACCTGGGTTACGAAGCGCTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCAt < 2:799304/142‑1 (MQ=255) aaaTCGAAGACCGTGGCAACCTGGGTTACGAAGCGCTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCggg < 1:961716/150‑1 (MQ=255) aaTCGAAGACCGTGGCAACCTGGGTTACGAAGCGCTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTGTCGGAACGGTCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACACACCGAAGCCGCCATCGACCGGGa > 1:448733/1‑150 (MQ=255) aaTCGAAGACCGTGGCAACCTGGGTTACGAAGCGCTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGa > 1:876167/1‑150 (MQ=255) gAAGACCGTGGCAACCTGGGTTACGAAGCGCTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAg < 2:1343850/150‑1 (MQ=255) aaGACCGTGGCAACCTGGGTTACGAAGCGCTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAgg < 2:876167/150‑1 (MQ=255) aGACCGTGGCAACCTGGGTTACGAAGCGCTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAGGc < 1:1058308/150‑1 (MQ=255) cTGGGTTACGAAGCGCTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGGCGGCATCGActt > 2:18356/1‑126 (MQ=255) cTGGGTTACGAAGCGCTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGGCGGCATCGActt < 1:18356/128‑3 (MQ=255) gTTACGAAGCGCTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTgg < 2:142183/150‑1 (MQ=255) cGAAGCGCTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTGGCGAt < 2:366333/150‑1 (MQ=255) gcgcTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTGGCGATCAcc > 2:384717/1‑150 (MQ=255) cTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTGGCGATCACCGAc > 2:904079/1‑150 (MQ=255) cTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTGGCGATCACCGAc > 1:1067808/1‑150 (MQ=255) tACAAGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATgcc < 2:405343/99‑1 (MQ=255) tACAAGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATgcc > 1:405343/1‑99 (MQ=255) aaGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTGGCGATCACCGACATCTTc < 2:1099886/150‑1 (MQ=255) aGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTGGCGATCACCGACATCTTCg > 2:41428/1‑150 (MQ=255) ccAGAACATCATCGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTGGCGATCACCGACATCTTCGACACCCt > 1:767298/1‑150 (MQ=255) cAGAACATCATCGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTGGCGATCACCGACATCTTCGACACCCTg > 2:102160/1‑150 (MQ=255) cGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCGACAAGTCGATGCTGCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTGGCGATCACCGACATCTTCGACACCCTGCAGGTTTACCt < 2:339453/150‑1 (MQ=255) cacaACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTGGCGATCACCGACATCTTCGACACCCTGCAGGTTTACCTGGGCTCGCTg < 1:384717/150‑1 (MQ=255) caACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTGGCGATCACCGACATCTTCGACACCCTGCAGGTTTACCTGGGCTCGCTGTa < 2:1067808/150‑1 (MQ=255) ccAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTGGCGATCACCGACATCTTCGACACCCTGCAGGTTTACCTGGGCTCGCTGTACACCAAc > 1:607640/1‑150 (MQ=255) agagCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTGGCGATCACCGACATCTTCGACACCCTGCAGGTTTACCTGGGCTCGCTGTACACCAACGa < 1:904079/150‑1 (MQ=255) gCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCTCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTGGCGATCACCGACATCTTCGACACCCTGCAGGTTTACCTGGGCTCGCTGTACACCAACGACTTCAACCGCt > 2:45207/1‑150 (MQ=255) gCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGgtg > 1:456792/1‑78 (MQ=255) gCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGgtg < 2:456792/78‑1 (MQ=255) cTGTTCACCAGCTACCAGACCAACGTGCCACACATGATTGGCACGACCGACCGTGAAAAGGCCAAGACCCACGGTGTGGCGATCACCGACATCTTCGACACCCTGCAGGCTTACCTGCGCTCGCTGTACACCAACGACTTCAACCGCttt > 2:15021/1‑150 (MQ=255) aggcctgccAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTGGCGATCACCGACATCTTCGACACCCTGCAGGTTTACCTGGGCTCGCTGTACACCAACGACTTCAACCGCttt < 1:807433/143‑1 (MQ=255) ccAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTGGCGATCACCGACATCTTCGACACCCTGCAGGTTTACCTGGGCTCGCTGTACACCAACGACTTCAACCGCTTTGGCCGCa > 2:51795/1‑150 (MQ=255) cAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTGGCGATCACCGACATCTTCGACACCCTGCAGGTTTACCTGGGCTCGCTGTACACCAACGACTTCAACCGCTTTGGCCGCAc > 1:877854/1‑150 (MQ=255) gCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGATCCACGGTGTGGCGATCACCGACATCTTCTACACCCTGCAGGTTTACCTGGGCTCGCTGTACACCAACGGCTTCAACCGCTTTGGCCGCACtt < 2:448733/150‑1 (MQ=255) aaCGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTGGCGATCACCGACATCTTCGACAcc < 1:39935/81‑1 (MQ=255) aaCGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTGGCGATCACCGACATCTTCGACAcc > 2:39935/1‑81 (MQ=255) ccACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTGGCGATCACCGACATCTTCGACACCCTGCAGGTTTACCTGGGCTCGCTGTACACCAACGACTTCAACCGCTTTGGCCGCACTTACCAGGTCAACGTCCAg < 2:607640/150‑1 (MQ=255) ccACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTGGCGATCACCGACATCTTCGACACCCTGCAGGTTTACCTGGGCTCGCTGTACACCAACGACTTCAACCGCTTTGGCCGCACTTACCAGGTCAACGTCCAg < 1:102160/150‑1 (MQ=255) aTGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTGGCGATCACCGACATCTTCGACACCCTGCAGGTTTACCTGGGCTCGCTGTACACCAACGACTTCAACCGCTTTGGCCGCACTTACCAGGTCAACGTCCAGGCCGagcagc < 2:877854/150‑1 (MQ=255) | TCTGCAAATCGAAGACCGTGGCAACCTGGGTTACGAAGCGCTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCACAACGTCCCAGAGCTGGCAGGCCTGTTCACCAGCTACCAGGTCAACGTGCCACAAGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCACGGTGTGGCGATCACCGACATCTTCGACACCCTGCAGGTTTACCTGGGCTCGCTGTACACCAACGACTTCAACCGCTTTGGCCGCACTTACCAGGTCAACGTCCAGGCCGAGCAGC > NC_002947/3880279‑3880565 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |