| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,281,630 | A→T | 6.3% | intergenic (‑163/+555) | PP_3751 ← / ← PP_3753 | cyanate transporter/AraC family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,281,630 | 0 | A | T | 6.3% | 195.8 / 4.4 | 63 | intergenic (‑163/+555) | PP_3751/PP_3753 | cyanate transporter/AraC family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (32/27); new base T (2/2); total (34/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.37e-01 | |||||||||||
ACAGGAACTGGCCATTATCCCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAACACTCGCTGCTGGAGC > NC_002947/4281488‑4281776 | aCAGGAACTGGCCATTATCCCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAgcgc > 2:1359216/1‑150 (MQ=255) aGGAACTGGCCATTATCCCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCa > 2:66044/1‑150 (MQ=255) ggAACTGGCCATTATCCCGGCTCGGCTGGCATGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAACGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGACAATAAGCGGCGCTACAGTAGCGCCat < 2:842612/150‑1 (MQ=255) tGGCCATTATCCCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCa > 2:487594/1‑150 (MQ=255) gCCATTATCCCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCAcc > 2:344722/1‑150 (MQ=255) cATTATCCCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGTGGCGCTACTGTAGCGccgcttat > 1:1273468/1‑139 (MQ=255) cATTATCCCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGTGGCGCTACTGTAGCGccgcttat < 2:1273468/145‑7 (MQ=255) cATTATCCCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCata < 1:104230/142‑1 (MQ=255) cATTATCCCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCata > 2:104230/1‑142 (MQ=255) gcttacggctcggctGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCcaca > 2:1026502/6‑150 (MQ=255) cggctcggctGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCtt < 2:915634/150‑1 (MQ=255) cggctcggctGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCtt < 1:66044/150‑1 (MQ=255) gctGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAACATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCCCCCCACACGCTTGGAGACt < 1:1319734/150‑1 (MQ=255) gctGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACt < 2:392409/150‑1 (MQ=255) tggcAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGc > 2:197379/1‑150 (MQ=255) gcAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGcac < 1:487594/150‑1 (MQ=255) aTTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATg < 1:985778/150‑1 (MQ=255) ttGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGCCTGACATGCACAACCGTATCGAATgg > 2:330255/1‑150 (MQ=255) ttGGATGCAGGTCAGTGGCCACCTGAATAGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTg < 1:284136/127‑1 (MQ=255) ttGGATGCAGGTCAGTGGCCACCTGAATAGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTg > 2:284136/1‑127 (MQ=255) ggATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGc < 2:252143/150‑1 (MQ=255) gATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAg < 2:913573/90‑1 (MQ=255) gATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAg > 1:913573/1‑90 (MQ=255) gCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATggg < 2:356532/145‑1 (MQ=255) gCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATggg > 1:356532/1‑145 (MQ=255) aGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCtt < 1:35664/111‑1 (MQ=255) aGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCtt > 2:35664/1‑111 (MQ=255) gTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGcc < 1:197379/150‑1 (MQ=255) gCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTa > 1:1305578/1‑150 (MQ=255) aCCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGCAGCCTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGc < 1:330255/150‑1 (MQ=255) aCCTGAATGGACGATTAGCCACACGACTACACACGAGATTGTGTATCGTGGTTGCCAATAAGCGGCGCTACAGGAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGc < 1:1026502/150‑1 (MQ=255) tGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTa > 1:1338161/1‑150 (MQ=255) gAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTg > 2:1338912/1‑96 (MQ=255) gAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTg < 1:1338912/96‑1 (MQ=255) aCGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGcc > 1:171851/1‑150 (MQ=255) gATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATc > 1:817840/1‑143 (MQ=255) gATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATc < 2:817840/143‑1 (MQ=255) gCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTg > 1:335075/1‑90 (MQ=255) gCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTg < 2:335075/90‑1 (MQ=255) gCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGACGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCg > 2:989679/1‑150 (MQ=255) cTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACAGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGc > 1:447739/1‑150 (MQ=255) ccGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTg > 1:612284/1‑150 (MQ=255) tATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGACCa < 2:1066076/150‑1 (MQ=255) aTGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCaaa < 2:1358470/108‑1 (MQ=255) aTGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCaaa > 1:1358470/1‑108 (MQ=255) gcAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACGCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGgcgc > 1:1098659/1‑150 (MQ=255) gcAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCt < 2:173521/120‑1 (MQ=255) gcAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCt > 1:173521/1‑120 (MQ=255) tGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCATACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAATCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCaa < 1:1359216/150‑1 (MQ=255) tATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGc > 1:864634/1‑150 (MQ=255) tCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGATTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCgg > 1:812871/1‑150 (MQ=255) tCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCACATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCgg > 1:483540/1‑150 (MQ=255) cGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGc < 2:1338161/150‑1 (MQ=255) cAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCCCATCCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAacac > 2:551012/1‑150 (MQ=255) aaTAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAACACt > 1:688778/1‑150 (MQ=255) aTAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAACACTc < 1:344722/150‑1 (MQ=255) tAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAACACTCg > 2:317429/1‑150 (MQ=255) gcggcgCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGTCCTTGAACACTCgctg > 2:604793/1‑150 (MQ=255) atggcgCTACTGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAgg < 2:1043012/116‑1 (MQ=255) atggcgCTACTGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAgg > 1:1043012/3‑118 (MQ=255) gcgcTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAACACTCGctgctg < 1:317429/150‑1 (MQ=255) gcTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAACACTCGCTGCTGGa < 1:201627/150‑1 (MQ=255) tACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAACACTCGCTGCTGGAGc > 2:1057674/1‑150 (MQ=255) | ACAGGAACTGGCCATTATCCCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAACACTCGCTGCTGGAGC > NC_002947/4281488‑4281776 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |