Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,484,768 | A→T | 10.5% | intergenic (+368/‑101) | PP_3976 → / → PP_3977 | isochorismatase family hydrolase/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,484,768 | 0 | A | T | 10.5% | 109.7 / 4.9 | 38 | intergenic (+368/‑101) | PP_3976/PP_3977 | isochorismatase family hydrolase/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (16/18); new base T (2/2); total (18/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.73e-01 |
CTCAAACCCTGGCAGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCGGGTCTTCCGCGCAAGCTTCAG > NC_002947/4484623‑4484913 | cTCAAACCCTGGCAGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGaataat > 1:912727/1‑150 (MQ=255) tCAAACCCTGGCAGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATc > 1:1017978/1‑150 (MQ=255) aaaCCCTGGCAGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAg < 1:1039040/150‑1 (MQ=255) aCCCTGGCAGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAggg > 1:693364/1‑150 (MQ=255) cAGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGaa < 2:912727/150‑1 (MQ=255) tCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATg > 1:53673/1‑150 (MQ=255) tCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATg < 1:765923/150‑1 (MQ=255) cGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATgg < 2:1017978/150‑1 (MQ=255) ccAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCg < 2:766848/144‑1 (MQ=255) ccAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCg > 1:766848/1‑144 (MQ=255) aaGCAGATGATGTCGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAGATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAATAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTa < 1:1360292/150‑1 (MQ=255) aGCAGATGATGTTGGAGGCATATGGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTag < 1:594188/150‑1 (MQ=255) gatgatGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTaga < 2:69809/147‑1 (MQ=255) gatgatGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTaga > 1:69809/1‑147 (MQ=255) tGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAAccc < 1:60083/150‑1 (MQ=255) cATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCaa < 2:877904/107‑2 (MQ=255) cATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAg > 1:877904/1‑107 (MQ=255) tatCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCACCTGTGAGAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGCAGAACCTTAAACCCTTATCCTa > 1:1156555/1‑150 (MQ=37) tCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAgg < 1:1112686/150‑1 (MQ=255) gAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGATTATTCAGGGCttttt < 1:496503/90‑3 (MQ=39) gAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGATTATTCAGGGCttttt > 2:496503/1‑88 (MQ=39) agagAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTg > 1:514254/1‑150 (MQ=255) gagaAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGa < 2:693364/150‑1 (MQ=255) agaAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGAt < 1:757356/150‑1 (MQ=255) gCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGCTTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTCCTGATCGGTAg < 2:53673/150‑1 (MQ=255) gACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATgg > 2:552817/1‑150 (MQ=255) aaTCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATTGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGc > 1:408286/1‑150 (MQ=255) ccccAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCgg < 1:552817/150‑1 (MQ=255) ccccAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCgg > 2:327992/1‑150 (MQ=255) ccccAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCgg < 2:521813/150‑1 (MQ=255) aCGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATg > 1:619740/1‑120 (MQ=255) aCGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATg < 2:619740/120‑1 (MQ=255) gCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCGGGTCTTCcgcg > 1:936470/1‑150 (MQ=255) ttcaaaGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGa > 2:1401656/4‑82 (MQ=255) ttcaaaGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGa < 1:1401656/79‑1 (MQ=255) aaGCCCTGATTATTCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGa < 1:331704/115‑1 (MQ=255) aaGCCCTGATTATTCAGGGCTTTGAATATGGCGGAAGCGCAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGa > 2:331704/1‑115 (MQ=255) aaGCCCTGAATAATCAGGGCTTTGAATATGGAGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCCCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACATCCTTTATGGACTGTAAGCTAGCAAAACCAGGTCTTCCACGCaatc > 2:483876/1‑148 (MQ=38) cTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCGGGTCTTCCGCGCAAGCTTCAg > 2:814777/1‑150 (MQ=255) | CTCAAACCCTGGCAGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCGGGTCTTCCGCGCAAGCTTCAG > NC_002947/4484623‑4484913 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |