| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,980,399 | T→G | 5.2% | intergenic (‑145/+16) | flgF ← / ← PP_4387 | flagellar basal‑body rod protein FlgF/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,980,399 | 0 | T | G | 5.2% | 230.1 / 2.8 | 76 | intergenic (‑145/+16) | flgF/PP_4387 | flagellar basal‑body rod protein FlgF/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (35/37); new base G (2/2); total (37/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.31e-01 | |||||||||||
TCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGG > NC_002947/4980250‑4980548 | tCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCTCTGTCACTGGTCACGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGCCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCt < 2:1279027/150‑1 (MQ=255) ccACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTg > 1:704795/1‑150 (MQ=255) cacaGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGc > 2:577153/1‑150 (MQ=255) acaGTTTCTCCTCTGCGCGTAGCTTCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCg > 1:1037805/1‑150 (MQ=255) acaGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCg > 2:1065137/1‑150 (MQ=255) ttCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAg < 2:907023/150‑1 (MQ=255) ttCTCATCTTCGCGTAGCTGCCGCGCTGTAACTAGCCTATTACCAATTAATGATTGTACCAAGTCTGAAACAGTCAGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAg < 1:672950/150‑1 (MQ=255) tctcCTCTGCGCGTAGCTGCGGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAgg < 2:1037805/150‑1 (MQ=255) ctctGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCtt < 2:606061/150‑1 (MQ=255) ctctGCGCGGAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCtt < 1:421770/150‑1 (MQ=255) cgTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAAt < 2:1197521/150‑1 (MQ=255) cgTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAAt < 1:577153/150‑1 (MQ=255) gCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGgc < 2:334016/150‑1 (MQ=255) cgcgCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCCTGCTCAATGGGCGCGGc > 1:464452/1‑150 (MQ=255) cgagcTGTCACTGGGAAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGc > 2:524367/4‑150 (MQ=255) gcgcTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAAt < 2:1135051/140‑1 (MQ=255) gcgcTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAAt > 1:1135051/1‑140 (MQ=255) tGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAggcg > 1:1378652/1‑150 (MQ=255) tGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAggcg > 2:1395598/1‑150 (MQ=255) tGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACAGTAAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAggcg > 2:1260583/1‑150 (MQ=255) gTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAggcgg < 1:1296474/150‑1 (MQ=255) gTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAggcgg > 2:120397/1‑150 (MQ=255) tCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAggcggc > 1:650523/1‑150 (MQ=255) cACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGgcggcg > 2:315895/1‑150 (MQ=255) aCTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCgt > 2:212588/1‑150 (MQ=255) ggCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCgttgtt < 1:212588/150‑1 (MQ=255) aGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTa > 2:719574/1‑150 (MQ=255) ggTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAg < 1:1299904/150‑1 (MQ=255) gTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTTCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAgg > 2:214788/1‑150 (MQ=255) gTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAgg < 2:384500/150‑1 (MQ=255) tCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAgggg > 2:1098304/1‑150 (MQ=255) cAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGcc > 1:423724/1‑150 (MQ=255) cAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGcc > 2:1120920/1‑150 (MQ=255) aaGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCa > 2:386188/1‑150 (MQ=255) gCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCaga > 1:583089/1‑150 (MQ=255) cAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCagag > 1:551963/1‑150 (MQ=255) aatTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGgc < 1:1040253/150‑1 (MQ=255) aatTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGgc < 1:547440/150‑1 (MQ=255) gAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCAc > 2:787149/1‑150 (MQ=255) cAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGc < 2:1057037/133‑1 (MQ=255) cAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGc > 1:1057037/1‑133 (MQ=255) aaGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGc < 2:603258/150‑1 (MQ=255) cTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCttt < 1:1098304/150‑1 (MQ=255) cacCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCgg < 1:719574/150‑1 (MQ=255) cacCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCgg < 2:574074/150‑1 (MQ=255) acCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCggg < 1:787149/150‑1 (MQ=255) ccGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCGGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGtt > 2:173323/1‑150 (MQ=255) cGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTtg < 1:1395598/150‑1 (MQ=255) ttACGGGGCTTTCAGCGCGGTAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTCGTCGTCGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTggg < 1:889881/150‑1 (MQ=255) aCGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGcc < 1:304651/150‑1 (MQ=255) gCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAaca < 1:1120920/150‑1 (MQ=255) tttCAGCGCGGCAAGTGGCAATAACCGTCAGTTTGTCGGCTGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGc < 1:401204/142‑1 (MQ=255) tttCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGc > 2:401204/1‑142 (MQ=255) cgcgGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGc < 2:583089/150‑1 (MQ=255) cAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCGGCCg < 1:173323/150‑1 (MQ=255) aaGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATTGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGAGCACCCCGCCTTCGACCGGGTCATGGGCCGAACACAGGTAGCGGCCgg < 2:1378652/150‑1 (MQ=255) aaGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCGGCCgg < 1:424667/150‑1 (MQ=255) gCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCGGCCGGTGAcc > 2:1343091/1‑150 (MQ=255) tttGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCGATTg > 1:21668/1‑150 (MQ=255) ttGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGa < 2:650523/150‑1 (MQ=255) ggcggATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGaa > 1:114323/1‑150 (MQ=255) gATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCAtt > 2:911904/1‑139 (MQ=255) gATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCAtt < 1:911904/139‑1 (MQ=255) gATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCAt < 1:820355/138‑1 (MQ=255) gATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCAt > 2:820355/1‑138 (MQ=255) gATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAAcggg > 1:354714/1‑150 (MQ=255) tGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCgg > 1:893153/1‑115 (MQ=255) tGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCgg < 2:893153/115‑1 (MQ=255) tGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAAcggggc > 2:1199463/1‑150 (MQ=255) ccttGCCGCAGGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATa > 1:1351636/3‑140 (MQ=255) ccttGCCGCAGGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATa < 2:1351636/138‑1 (MQ=255) ccttGCCGCAGGCGGCAAGGGCTTGCTCAACGGGCGCGCAAACCGGGGTCAACCATGGGTACAGAGTGTGCCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAAcggggcg > 1:739330/3‑150 (MQ=255) tttGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAAcggggcgg < 2:114323/150‑1 (MQ=255) ttGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAAcggggcggg < 2:423724/150‑1 (MQ=255) ttGCCGCAGGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAAcggggcggg < 2:739330/150‑1 (MQ=255) ccTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGgcgggggcagc > 2:77729/1‑150 (MQ=255) ccTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGgcgggggcagc < 2:551963/150‑1 (MQ=255) tGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCgg < 1:883664/79‑1 (MQ=255) tGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCgg > 2:883664/1‑79 (MQ=255) tGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGgcgggggcagcgg < 2:21668/150‑1 (MQ=255) | TCCACAGTTTCTCCTCTGCGCGTAGCTGCCGCGCTGTCACTGGGCAGGTTCCAAGCAATAATTGAACCAAGTCTGAAACACCCGGTTTACGGGGCTTTCAGCGCGGCAAGGGGCAATAACCGTCAGTTTGTCGGCGGATGTTTGCCGCCTGCGGCAAGGGCTTGCTCAATGGGCGCGGCAGGCGGCGTTGTTGTAGGGGCCAGAGTGGCGCACCCAGCCTTTGCCCGGGTTGTGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGG > NC_002947/4980250‑4980548 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |