Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,041,297 | T→A | 8.9% | intergenic (+227/‑435) | PP_5680 → / → PP_4447 | Cro/CI family transcriptional regulator/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,041,297 | 0 | T | A | 8.9% | 173.4 / 7.4 | 56 | intergenic (+227/‑435) | PP_5680/PP_4447 | Cro/CI family transcriptional regulator/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (25/26); new base A (2/3); total (27/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.04e-01 |
GTGTTGATCCACAGAGGGTTAGGGATAGCCTTAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTGGTATCAATATCAGCCCCCCACCGAAAAGTCATT > NC_002947/5041152‑5041444 | gtgtTGATCCACAGAGGGTTAGGGATAGCCTTAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATg < 2:970923/150‑1 (MQ=255) gATCCACAGAGGGTTAGGGATAGCCTTAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGGCCTCTTCAGCGGTGCGCCTTGAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGt < 2:526382/150‑1 (MQ=255) tCCACAGAGGGTTAGGGATAGCCTTAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGttt > 1:733763/1‑150 (MQ=255) tCCACAGAGGGTTAGGGATAGCCTTAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCATAAGGCGGtta < 2:411553/150‑2 (MQ=255) ccACAGAGGGTTAGGGATAGCCTTAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTtc < 1:225971/150‑1 (MQ=255) aGCCTTAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTctgct < 2:1049696/150‑1 (MQ=255) ttAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGa > 1:1059953/1‑150 (MQ=255) tCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGa < 2:175501/150‑1 (MQ=255) cTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAg < 1:1098463/150‑1 (MQ=255) tGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCATAAGGCGGttag < 2:621639/112‑3 (MQ=255) tGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCATAAGGCGGttag > 1:621639/1‑110 (MQ=255) gATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTctgctg > 2:1208666/1‑130 (MQ=255) gATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTctgctg < 1:1208666/130‑1 (MQ=255) ccAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTccaac > 2:561373/1‑150 (MQ=255) cAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTccaacc > 1:283484/1‑150 (MQ=255) acacCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTccaaccaa > 1:1338061/1‑150 (MQ=255) ctctGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCt > 2:914465/1‑150 (MQ=255) ctGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGAAGAGGGCGAAGGCCGATAGCCGAGTCCAACCAATTCTAt > 1:1142770/1‑150 (MQ=255) cATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTgg > 2:1376428/1‑150 (MQ=255) aCCTCTTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTct > 1:254952/1‑97 (MQ=255) aCCTCTTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTct < 2:254952/97‑1 (MQ=255) ctctTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGAc < 2:1059953/150‑1 (MQ=255) tctTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGAcc > 2:1160586/1‑150 (MQ=255) tctTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCATAAGGCGGttaggg < 1:616280/81‑5 (MQ=38) tctTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCATAAGGCGGttaggg > 2:616280/1‑77 (MQ=38) gctTCATCGTCGCGCCTTAAGCCCGCCGAGCAGCGACAGAGACCCCGAGTAAGGCCCCTTCCCGTCTTATTGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGAcc < 2:589960/149‑1 (MQ=255) aTCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGt > 2:576236/1‑150 (MQ=255) gcgcCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCg > 1:44139/1‑150 (MQ=255) cgcCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCgt < 2:283484/150‑1 (MQ=255) gcCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCgtg < 2:733763/150‑1 (MQ=255) ccTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCgtgt < 2:44139/150‑1 (MQ=255) ttAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGc < 1:576236/150‑1 (MQ=255) ttAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGc < 1:914465/150‑1 (MQ=255) ttAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGc > 1:372860/1‑150 (MQ=255) aagaGCCAGAGACCCCTAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGt < 1:601388/150‑1 (MQ=255) aagaGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCa < 2:1207860/60‑1 (MQ=255) aagaGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCa > 1:1207860/1‑60 (MQ=255) cAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGc < 1:501691/69‑1 (MQ=255) cAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGc > 2:501691/1‑69 (MQ=255) cccGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTGGTATCAATATCa > 1:1306777/1‑150 (MQ=255) ccGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTAGCAGAGAAAAGTGGTATCAATATCAg > 2:890064/1‑150 (MQ=255) gCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGGTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTGGTATCAATATCAGcccc < 2:1338061/150‑1 (MQ=255) gACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGc < 1:1260724/108‑1 (MQ=255) gACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGc > 2:1260724/1‑108 (MQ=255) aCCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTGGTATCAATATCAGCCCCCCAcc > 1:1390445/1‑150 (MQ=255) cccTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTAtt > 2:1026539/1‑77 (MQ=255) cccTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTAtt < 1:1026539/77‑1 (MQ=255) cccTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCAGATTCCAAACAATTCTATTTTTCGACCTGGCCTTACCGCAGTAGAGCGTGTGCTATCAGAGAAACGTGGTATCAATCTCAGCCCCACACCgg > 1:185729/1‑149 (MQ=255) ccTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTg > 2:458345/1‑125 (MQ=255) ccTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTg < 1:458345/125‑1 (MQ=255) cTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCa < 1:62417/96‑1 (MQ=255) cTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCa > 2:62417/1‑96 (MQ=255) tAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTGGTATCAATATCAGCCCCCCACCGaaaa < 1:1160586/150‑1 (MQ=255) cGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCaga < 1:817680/111‑1 (MQ=255) cGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCaga > 2:817680/1‑111 (MQ=255) ccTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTGGTATCAATATCAGCCCCCCACCGAAAAGTCAtt < 2:343492/150‑1 (MQ=255) | GTGTTGATCCACAGAGGGTTAGGGATAGCCTTAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGAGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTGGTATCAATATCAGCCCCCCACCGAAAAGTCATT > NC_002947/5041152‑5041444 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |