Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,115,751 T→G 7.6% H28P (CAC→CCC)  PP_4500 ← TrpH family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,115,7510TG 7.6% 184.4 / 6.2 67H28P (CAC→CCC) PP_4500TrpH family protein
Reads supporting (aligned to +/- strand):  ref base T (29/32);  new base G (3/2);  total (32/35)
Fisher's exact test for biased strand distribution p-value = 6.68e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.18e-01

CCCAGCACATGGATGGTCGCGCCGCCCCACGTGCAGGACAGCTCCACCCCGCTGACCCAGCGCATACCCAGGTCAACGCAGGCCTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCTTTCGCTGGATTCGATGTTTGTTATTATGCCGTCACATCCCGATTCTGGCTGCC  >  NC_002947/5115604‑5115897
                                                                                                                                                   |                                                                                                                                                  
cccAGCACATGGATGGTCGCGCCGCCCCACGTGCAGGACAGCTCCACCCCGCTGACCCAGCGCATACCCAGGTCAACGCAGGCCTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGc                                                                                                                                                  >  1:369263/1‑150 (MQ=255)
  cAGCACATGGATGGTCGCGCCGCCCCACGTGCAGGACAGCTCCACCCCGCTGACCCAGCGCATACCCAGGTCAACGCAGGCCTGGCGCGCTTCGGGCAGGCCTTACAGCGTGTCCTAGTCGAACAGTGCCAGCTCGTGCACCCCGTGCTc                                                                                                                                                >  2:726700/1‑150 (MQ=255)
    gCACATGGATGGTCGCGCCGCCCCACGTGCAGGACAGCTCCACCCCGCTGACCCAGCGCATACCCAGGTCAACGCAGGCCTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCAt                                                                                                                                              <  1:1427023/150‑1 (MQ=255)
        atggatggTCGCGCAGCCCCACGTTCAGGACAGCTCCACCCCGCTGACCCAGCGCATACCCAGGTCAACGCAGGCCTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGc                                                                                                                                          >  2:1196165/1‑150 (MQ=255)
            atggTCGCGCCGCCCCACGTGCAGGACAGCTCCACCCCGCTGACCCAGCGCATACCCAGGTCAACGCAGGCCTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCgg                                                                                                                                      <  1:309336/150‑1 (MQ=255)
             tggTCGCGCCGCCCCACGTGCAGGACAGCTCCACCCCGCTGACCCAGCGCATACCCAGGTCAACGCAGGCCTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCggg                                                                                                                                     <  2:712210/150‑1 (MQ=255)
                tCGCGCCGCCCCACGTGCAGGACAGCTCCACCCCGCTGACCCAGCGCATACCCAGGTCAACGCAGGCCTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCaa                                                                                                                                  <  2:853604/150‑1 (MQ=255)
                           cACGTGCAGGACAGCTCCACCCCGCTGACCCAGCGCATACCCAGGTCAACGCAGGCCTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGaa                                                                                                                       <  2:1214559/150‑1 (MQ=255)
                              gTGCAGGACAGCTCCACCCCGCTGACCCAGCGCATACCCAGGTCAACGCAGGCCTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGGGCTCAt                                                                                                                                              <  2:1292869/124‑1 (MQ=255)
                              gTGCAGGACAGCTCCACCCCGCTGACCCAGCGCATACCCAGGTCAACGCAGGCCTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGGGCTCAt                                                                                                                                              >  1:1292869/1‑124 (MQ=255)
                                   ggACAGCTCCACCCCGCTGACCCAGCGCATACCCAGGTCAACGCAGGCCTGGCGCGCGTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAg                                                                                                               <  1:580080/150‑1 (MQ=255)
                                                        ccAGCGCATACCCAGGTCAACGCAGGCCTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAg                                                                                                                      <  2:82686/122‑1 (MQ=255)
                                                        ccAGCGCATACCCAGGTCAACGCAGGCCTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAg                                                                                                                      >  1:82686/1‑122 (MQ=255)
                                                          aGCGCATACCCAGGTCAACGCAGGCCTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCtgt                                                                                        <  2:364441/150‑1 (MQ=255)
                                                                  cccAGGTCAACGCAGGCCTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCgg                                                                                                                                      <  2:935132/96‑1 (MQ=255)
                                                                  cccAGGTCAACGCAGGCCTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCgg                                                                                                                                      >  1:935132/1‑96 (MQ=255)
                                                                   ccAGGTCAACGCAGGCCTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAAc                                                                                                                                 <  1:487126/100‑1 (MQ=255)
                                                                   ccAGGTCAACGCAGGCCTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAAc                                                                                                                                 >  2:487126/1‑100 (MQ=255)
                                                                   ccAGGTCAACGCAGGCCTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCa                                                                               >  1:243049/1‑150 (MQ=255)
                                                                       gTCAACGCAGGCCTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATc                                                                           >  1:953701/1‑150 (MQ=255)
                                                                             gCAGGCCTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAAc                                                                                                                                 <  2:619653/90‑1 (MQ=255)
                                                                             gCAGGCCTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAAc                                                                                                                                 >  1:619653/1‑90 (MQ=255)
                                                                                 gCCTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCtgt                                                                                        <  2:569994/127‑1 (MQ=255)
                                                                                 gCCTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCtgt                                                                                        >  1:569994/1‑127 (MQ=255)
                                                                                   cTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAgg                                                                                                                     <  2:310155/96‑1 (MQ=255)
                                                                                   cTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAgg                                                                                                                     >  1:310155/1‑96 (MQ=255)
                                                                                   cTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATc                                                                           <  1:1228697/138‑1 (MQ=255)
                                                                                   cTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATc                                                                           >  2:1228697/1‑138 (MQ=255)
                                                                                   cTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATaga                                                               <  1:99878/150‑1 (MQ=255)
                                                                                    tGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATagag                                                              <  2:1291928/150‑1 (MQ=255)
                                                                                    tGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATagag                                                              <  2:1185767/150‑1 (MQ=255)
                                                                                           attCGGGCAGGCCTTCGAGGGTGTAATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCt                                                       >  1:1124303/2‑150 (MQ=255)
                                                                                                 gCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCTTTCGCt                                                 >  2:1173452/1‑150 (MQ=255)
                                                                                                   aGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCt                                                       <  1:775535/142‑1 (MQ=255)
                                                                                                   aGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCt                                                       >  2:775535/1‑142 (MQ=255)
                                                                                                    ggCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCTTTCGCTGGa                                              >  2:512040/1‑150 (MQ=255)
                                                                                                     gCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCTTTCGCTGGAt                                             <  1:620186/150‑1 (MQ=255)
                                                                                                       cTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCTTTCGCTGGATTc                                           >  2:592487/1‑150 (MQ=255)
                                                                                                        ttCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCTTTCGCTGGa                                              <  1:42774/146‑1 (MQ=255)
                                                                                                        ttCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCTTTCGCTGGa                                              >  2:42774/1‑146 (MQ=255)
                                                                                                        ttCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCTTTCGCTGGATTCg                                          >  2:539886/1‑150 (MQ=255)
                                                                                                        ttCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGGGCTCATGAGCACggggt                                                                                                                                   >  1:1293116/1‑59 (MQ=37)
                                                                                                        ttCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGGGCTCATGAGCACggggt                                                                                                                                   <  2:1293116/61‑3 (MQ=37)
                                                                                                         tCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCTTTCGCTGGATTCGa                                         <  1:592487/150‑1 (MQ=255)
                                                                                                          cGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCTTTCGCTGGATTCGAt                                        <  1:1196165/150‑1 (MQ=255)
                                                                                                           gAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCAt                                                                                                                                              <  1:759516/47‑1 (MQ=255)
                                                                                                           gAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCAt                                                                                                                                              >  2:759516/1‑47 (MQ=255)
                                                                                                           gAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGc                                                                                >  1:1147621/1‑109 (MQ=255)
                                                                                                           gAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGc                                                                                <  2:1147621/109‑1 (MQ=255)
                                                                                                             gggTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCa                                                                                                                               <  1:1207069/60‑1 (MQ=255)
                                                                                                             gggTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCa                                                                                                                               >  2:1207069/1‑60 (MQ=255)
                                                                                                                  tCATGGTCGGTCCGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCTTTCGCTGGATTCGATGTTTGtta                                <  1:512040/150‑1 (MQ=255)
                                                                                                                  tCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTc                                                                    <  1:1203536/114‑1 (MQ=255)
                                                                                                                  tCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTc                                                                    >  2:1203536/1‑114 (MQ=255)
                                                                                                                    aTGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGGAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCTTTCGCTGGATTCGATGTTTGttact                              >  2:655730/1‑148 (MQ=255)
                                                                                                                    aTGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCa                                                                               >  2:980961/1‑101 (MQ=255)
                                                                                                                    aTGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCa                                                                               <  1:980961/101‑1 (MQ=255)
                                                                                                                    aTGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCTTTCGCTGGATTCGATGTTTGttatt                              >  2:392879/1‑150 (MQ=255)
                                                                                                                          ggtcAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCTTTCGCTGGATTCGATGTTTGTTATTATGCCg                        <  2:1124303/150‑1 (MQ=255)
                                                                                                                                tGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCTTTCGCTGGATTCGATGTTTGTTATTATGCCGTCACAt                  >  1:933314/1‑150 (MQ=255)
                                                                                                                                    aGCGCTTGAGCCCCGCGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGGCAGGGTGCCTTCGGAGGGCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCTTTCGCTGGATTCGATGTTTGTTATTATGCCGTCACATCCCg              <  2:1278707/150‑1 (MQ=255)
                                                                                                                                              ccccGTGCTCATGAGCCCGGGTAACCAGTAGCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCTTTCGCTGGATTCGATGTTTGTTATTATGCCGTCACATCCCGATTCTGGCTg    <  2:369263/150‑1 (MQ=255)
                                                                                                                                               cccGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCTTTCGCTGGATTCGATGTTTGTTATTATGCCGTCACATCCCGATTCTGGCTGc   <  2:953701/150‑1 (MQ=255)
                                                                                                                                                ccGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCTTTCGCTGGATTCGATGTTTGttatt                              >  1:236357/1‑122 (MQ=255)
                                                                                                                                                ccGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCTTTCGCTGGATTCGATGTTTGttatt                              <  2:236357/122‑1 (MQ=255)
                                                                                                                                                ccGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCTTTCGCTGGATTCGATGTTTGTTATTATGCCGTCACATCCCGATTCTGGCTGcc  >  1:91073/1‑150 (MQ=255)
                                                                                                                                                ccGGGCTCATGAGCACGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCTTTCGCTGGATTCGATGTTTGTTATTATGCCGTCACATCCCGATTCTGGCTGcc  >  2:1052272/1‑150 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
CCCAGCACATGGATGGTCGCGCCGCCCCACGTGCAGGACAGCTCCACCCCGCTGACCCAGCGCATACCCAGGTCAACGCAGGCCTGGCGCGCTTCGGGCAGGCCTTCGAGGGTGTCATGGTCGGTCAGTGCCAGCGCTTGCACCCCGTGCTCATGAGCCCGGGCAACCAGTACCGAAGGCGACAGGGCGCCGTCGGAGGCCGTGCTGTGACAGTGCAGATCAACATTCATAGAGGAGCGCTTTCGCTGGATTCGATGTTTGTTATTATGCCGTCACATCCCGATTCTGGCTGCC  >  NC_002947/5115604‑5115897

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: