Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,199,693 G→C 6.0% intergenic (+20/+53) PP_4579 → / ← PP_4580 LysR family transcriptional regulator/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,199,6930GC 6.0% 203.1 / 4.5 68intergenic (+20/+53)PP_4579/PP_4580LysR family transcriptional regulator/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (26/37);  new base C (2/2);  total (29/39)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.34e-01

AGCCTTGAGCTGGTGGTGGCGTGGCAGACCGGGGTGGCGTTGGTCGATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAGCGCCAGCTCTCTTTCACCACCCTGCGCCGCCCGCCCAGGATCAGCCAGCCAATCCCCAGCAACAGGCTTTCGACCACAAAGGCCAGCACAAAA  >  NC_002947/5199548‑5199842
                                                                                                                                                 |                                                                                                                                                     
aGCCTTGAGCTGGTGGTGGCGTGGCAGACCGGGGTGGCGTTGGTCGATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGc                                                                                                                                                   <  2:1228081/150‑1 (MQ=255)
  ccTTGAGCTGGTGGTGGCGTGTCAGACCGGGGTGGCGTTGGTCGATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGccc                                                                                                                                                 >  2:1417299/1‑150 (MQ=255)
  ccTTGAGCTGGTGGTGGCGTGGCAGACCGGGGTGGCGTTGGTCGATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTATGACAAAGAGTCTCCGTCTGTATCGGccc                                                                                                                                                 >  2:683390/1‑150 (MQ=255)
             tggtggCGTGGCAGACCGGGGTGGCGTTGGTCGATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCa                                                                                                                                      <  1:441795/150‑1 (MQ=255)
             tggtggCGTGGCAGACCGGGGTGGCGTTGGTCGATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCa                                                                                                                                      <  2:720509/150‑1 (MQ=255)
              ggtggCGTGGCAGACCGGGGTGGCGTTGGTCGATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCAt                                                                                                                                     <  2:74906/150‑1 (MQ=255)
              ggtggCGTGGCAGACCGGGGTGGCGTTGGTCGATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCAt                                                                                                                                     <  2:945737/150‑1 (MQ=255)
                  gcgtggcAGACCGGGGTGGCGTTGGTCGATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGccc                                                                                                                                 >  1:1373708/1‑150 (MQ=255)
                    gtggcAGACCGGGGTGGCGTTGGTCGATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCcgc                                                                                                                               >  1:472017/1‑150 (MQ=255)
                     tggcAGACCGGGGTGGCGTTGGTCGATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCAt                                                                                                                                     <  1:1363280/143‑1 (MQ=255)
                     tggcAGACCGGGGTGGCGTTGGTCGATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCAt                                                                                                                                     >  2:1363280/1‑143 (MQ=255)
                       gcAGACCGGGGTGGCGTTGGTCGATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGaa                                                                                                                            >  1:233888/1‑150 (MQ=255)
                         agcccGGGGTGGCGTTGGTCGATGCGGTGGTTGGGGTTTGCGGGCGGGTGTTGGCGCGGTATGCGGGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAg                                                                                                                          <  2:158910/147‑1 (MQ=255)
                          gACCGGGGTGGCGTTGGTCGATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAgg                                                                                                                         <  2:165289/150‑1 (MQ=255)
                          gACCGGGGTGGCGTTGGTCGATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAgg                                                                                                                         <  1:610984/150‑1 (MQ=255)
                            ccGGGGTGGCGTTGGTCGATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGc                                                                                                                       <  1:229047/150‑1 (MQ=255)
                            ccGGGGTGGCGTTGGTCGATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGc                                                                                                                       <  1:943917/150‑1 (MQ=255)
                                 gTGGCGTTGGTCGATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCggta                                                                                                                  <  1:1191025/150‑1 (MQ=255)
                                  tGGCGTTGGTCGATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGTCTGTAGGTGCGCGTTCGCGGGCATGCCCGCGAAAGGGCCggtac                                                                                                                 <  2:162988/150‑1 (MQ=255)
                                  tGGCGTTGGTCGATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCggtac                                                                                                                 >  1:907325/1‑150 (MQ=255)
                                    gagTTGGTGGTTGCGGAGGCCGGGGTGTGCTGGCTGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCGTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCggtacag                                                                                                               <  2:1373708/148‑1 (MQ=38)
                                      gTTGGTCGATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTGGCAGCCCTTTCGCGGGCATGCCcgc                                                                                                                               <  1:404469/132‑1 (MQ=255)
                                      gTTGGTCGATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCcgc                                                                                                                               >  2:404469/1‑132 (MQ=255)
                                          gTCGATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGgtacaggtacag                                                                                                         >  1:787363/1‑150 (MQ=255)
                                             gATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTAcagcag                                                                                                      >  2:965557/1‑150 (MQ=255)
                                               tGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGaa                                                                                                    >  2:237322/1‑150 (MQ=255)
                                                   gtgggtggGGTTTGCCGGCGGGTGTTGGCGCGGTATGAGGGGGATGTGGGTGGGCAGTGGATCGTGCTGGTCTGACCAACCGGCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTa                                                                                                <  1:1413998/150‑1 (MQ=38)
                                                      gtTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAgcg                                                                                             >  2:354072/1‑150 (MQ=255)
                                                       ttGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGAGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAgcgc                                                                                            >  1:1154500/1‑150 (MQ=255)
                                                          gggTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCgg                                                                                                                    <  2:379769/123‑1 (MQ=255)
                                                          gggTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCgg                                                                                                                    >  1:379769/1‑123 (MQ=255)
                                                          gggTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACACTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCTGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAGCGCCAg                                                                                         <  1:1361045/150‑1 (MQ=255)
                                                            gTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGGACAGGTACAGCAGAACTTAGCGCCAGct                                                                                       >  1:1062764/1‑150 (MQ=255)
                                                                gCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAGCGCCAGctctct                                                                                   <  1:354072/150‑1 (MQ=255)
                                                                 ccGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGACCGGTACAGGTACAGCAGAACTTAGCCCCAGCTCTCtt                                                                                  >  2:1398362/1‑150 (MQ=255)
                                                                   ggCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGaaa                                                                                                                           <  1:787885/107‑1 (MQ=255)
                                                                   ggCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGaaa                                                                                                                           >  2:787885/1‑107 (MQ=255)
                                                                    gCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGAGAGAGCCCAGTTACAGCAGAACTTAGCGCCAGCTCTCTTTca                                                                               >  2:474004/1‑150 (MQ=255)
                                                                          gtTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCa                                                                                                                                      >  1:596957/1‑89 (MQ=255)
                                                                          gtTGGCGCGGTATGCGCGGGATGTGGCTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCa                                                                                                                                      <  2:596957/89‑1 (MQ=255)
                                                                             ggCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAGCGCCAGCTCTCTTTCACCACCCTgc                                                                      <  2:787363/150‑1 (MQ=255)
                                                                             ggCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAGCGCCAGCTCTCTTTCACCACCCTgc                                                                      <  2:907325/150‑1 (MQ=255)
                                                                              gcgcGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGAGGGGCGATGGCTGGCCTACCAGCAACAATAATGGTATTGTGTCTGGTGGACTTAGCGCCAGCTCTCTTTCACCACCCTgcg                                                                     >  1:1386244/1‑150 (MQ=255)
                                                                                    tATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCACCTGTACCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCgctacaggcgga                                                                                                          <  1:819114/107‑5 (MQ=21)
                                                                                    tATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCACCTGTACCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCgctacaggcgga                                                                                                          >  2:819114/1‑103 (MQ=21)
                                                                                      tGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAGCGCCAGCTCTCTTTCACCACCCTGCGccgcccgc                                                             <  1:188490/150‑1 (MQ=255)
                                                                                         gcgGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTACCGGCCCTTTCGCGGGCATGCCCGCGAAAgg                                                                                                                         <  2:751924/87‑1 (MQ=255)
                                                                                         gcgGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTACCGGCCCTTTCGCGGGCATGCCCGCGAAAgg                                                                                                                         >  1:751924/1‑87 (MQ=255)
                                                                                         gcgGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGGCTCCGGCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAGCGGCAGCTCTCTTTCACCACCCTGCGCCgcccgcccg                                                          >  1:506837/1‑149 (MQ=255)
                                                                                           gggATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGCCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAGCGCCAGCTCTCTTTCACCACCCTGCGCCGCCCGCCCAgg                                                        <  1:1131125/150‑1 (MQ=255)
                                                                                               tgggggtgggCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAGCGCCAGCTCTCTTTCACCACCCTGCGCCGCCCGCCCAGGATca                                                    <  2:527268/147‑1 (MQ=255)
                                                                                                   ggtgggCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAGCGCAAGCTCTCTTTCACCACCCTGCGCCGCCCGCCCAGGATcagcca                                                <  1:683390/150‑1 (MQ=255)
                                                                                                    gtgggCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGGAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAGCGCCAGCTCTCTTTCACCACCCTGCGCCGCCCGCCCAGGATcagccag                                               <  1:1414162/150‑1 (MQ=255)
                                                                                                                     cTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAGCGCCAGCTCTCTTTCACCACCCTGCGCCGCCCGCCCAGGATCAGCCAGCCAATCCCCAGCAACAg                              <  1:237322/150‑1 (MQ=255)
                                                                                                                          cTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCTCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAGCGCCAGCTCTCTTTCACCACCCTGCGCCGCCCGCCCAGGATCAGCCAGCCAATCCCCAGCAACAGGCttt                         <  2:1040726/150‑1 (MQ=255)
                                                                                                                             aCCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCAAGACAGGTACAGCAGAACTTAGCGCCAGCTCTCTTTCACCACCCTGCGCCGCCCGCCCAGGATCAGCCAGCCAATCCCCAGCAACAGGCTTTCGa                      >  1:1175138/1‑150 (MQ=255)
                                                                                                                             aCCAACAGTCGCCGGCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAGCGCCAGCTCTCTTTCACCACCCTGCGCCGCCCGCCCAGGATCAGCCAGCCAATCCCCAGCAACAGGCTTTCGa                      <  2:658551/150‑1 (MQ=255)
                                                                                                                               cAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAGCGCCAGCTCTCTTTCACCACCCTGCGCCGCCCGCCCAGGATCAGCCAGCCAATCCCCAGCAACAGGCTTTc                        <  2:1299386/146‑1 (MQ=255)
                                                                                                                               cAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAGCGCCAGCTCTCTTTCACCACCCTGCGCCGCCCGCCCAGGATCAGCCAGCCAATCCCCAGCAACAGGCTTTc                        >  1:1299386/1‑146 (MQ=255)
                                                                                                                               cAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCCCAAGGGCCGCTACAGGTACAGCAGAACTTAGCGCCACCTCTCTTTCACCACCCTGCGCCGCCCGCCCCGGATCAGCCAGCCAATCCCCAGCAACAGGCTTTCGAcc                    >  2:50985/1‑150 (MQ=39)
                                                                                                                                aaCAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAGCGCCAGCTCTCTTTCACCACCCTGCGCCGCCCGCCCAGGATCAGCCAGCCAATCCCCAGCAACAGGCTTTCGACca                   <  2:168631/150‑1 (MQ=255)
                                                                                                                                 aCAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGCTACAGGTACAGCAGAACTTAGCGCCAGctctc                                                                                    <  2:456489/84‑1 (MQ=255)
                                                                                                                                 aCAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGCTACAGGTACAGCAGAACTTAGCGCCAGctctc                                                                                    >  1:456489/1‑84 (MQ=255)
                                                                                                                                 aCAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCACGAAAGGGCCGGGACAGGTACAGCAGAACTTAGCGCCAGCTCTCTTTCACGACCCTGCGCCGCCCGCCCAGGATCAGCCAGCCAATCCCCAGCAACCGGCTTTCGACcac                  >  2:452850/1‑150 (MQ=255)
                                                                                                                                     tctcCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAGCGCCAGCTCTCTTTCACCACCCTGCGCCGCCCGCCCAg                                                         <  1:612214/107‑1 (MQ=255)
                                                                                                                                     tctcCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAGCGCCAGCTCTCTTTCACCACCCTGCGCCGCCCGCCCAg                                                         >  2:612214/1‑107 (MQ=255)
                                                                                                                                         cGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAGCGCCAGCTCTCTTTCACCACCCTGCGCCGCCCGCCCAGGATCAGCCAGCCAATCCCCAGCAACAGGCTTTCGACCACAAAGGCCa          <  1:1417299/150‑1 (MQ=255)
                                                                                                                                            cTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAGCGCCAGCTCTCTTTCACCACCCTGCGCCGCCCGCCCAGGATCAGCCAGCCAATCCCCAGCAACAGGCTTTCGACCACAAAGGCCAGca       <  2:1154500/150‑1 (MQ=255)
                                                                                                                                                 gCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAGCGCCAGCTCTCTTTCACCACCCTGCGCCGCCCGCCCAGGATCAGCCAGCCAATCCCCAGCAACAGGCTTTCGACCACAAAGGCCAGCACaaaa  >  2:1414157/1‑150 (MQ=255)
                                                                                                                                                 |                                                                                                                                                     
AGCCTTGAGCTGGTGGTGGCGTGGCAGACCGGGGTGGCGTTGGTCGATGAGGTGGTTGGGGTTTGCCGGCAGGTGTTGGCGCGGTATGCGCGGGATGTGGGTGGGCAGCGGATCGTGCTGGTCTGACCAACAGTCTCCGCCTGTAGCGGCCCTTTCGCGGGCATGCCCGCGAAAGGGCCGGTACAGGTACAGCAGAACTTAGCGCCAGCTCTCTTTCACCACCCTGCGCCGCCCGCCCAGGATCAGCCAGCCAATCCCCAGCAACAGGCTTTCGACCACAAAGGCCAGCACAAAA  >  NC_002947/5199548‑5199842

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: