| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,367,831 | A→T | 9.5% | K102M (AAG→ATG) ‡ | PP_4720 → | RNA‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,367,831 | 0 | A | T | 9.5% | 194.5 / 8.6 | 63 | K102M (AAG→ATG) ‡ | PP_4720 | RNA‑binding protein |
| Reads supporting (aligned to +/- strand): ref base A (32/25); new base T (3/3); total (35/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGAAGACCGCGAAGAACGCGCCGAGACCATCGCCGAGCTGTGCAAGGCCGGCCGTGCCGAGCTGGTGCAGACCATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGAAAAGCCCAGCACCAGGAAGCAGAACATCTGCCAGCGCTCGCCCACGGAAATACCGTAGCGCAAGGTGTAA > NC_002947/5367685‑5367977 | ggAAGACCGCGAAGAACGCGCCGAGACCATCGACGAGCCGAGCACCGTACCCCCTGCCGAGCTGGTGCAGACCATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTa > 1:248531/1‑150 (MQ=255) ccGCGAAGAACGCGCCGAGACCATCGCCGAGCTGTGCAAGGCCGGCCGTGCCGAGCTGGTGCAGACCATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTa > 1:1056271/1‑150 (MQ=255) cgAAGAACGCGCCGAGACCATCGCCGAGCTGTGCAAGGCCGGCCGTGCCGAGCTGGTGCAGACCATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCt < 2:248531/150‑1 (MQ=255) gaCCATCGCCGAGCTGTGCAAGGCCGGCCGTGCCGAGCTGGTGCAGACCATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGcgcg > 2:297009/1‑150 (MQ=255) cATCGCCGAGCTGTGCAAGGCCGGCCGTGCCGAGCTGGTGCAGACCATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGcgcgttc > 1:1176680/1‑147 (MQ=255) cATCGCCGAGCTGTGCAAGGCCGGCCGTGCCGAGCTGGTGCAGACCATCGGAAAGAAAGCGCTGATCTACCGCAAGAACCAACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTAGAAGTAACGGTAGATCCGATCAGTGGAGCGGTg > 2:30868/1‑150 (MQ=255) ccGAGCTGTGCAAGGCCGGCCGTGCCGAGCTGGTGCAGACCATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAAcgc > 1:30788/1‑150 (MQ=255) gAGCTGTGCAAGGCCGGCCGTGCCGAGCTGGTGCAGACCATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACgcgc < 2:204672/150‑1 (MQ=255) gCTGTGCAAGGCCGGCCGTGCCGAGCTGGTGCGCACCATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGcc‑c < 1:1077206/150‑1 (MQ=255) tgCAAGGCCGGCCGTGCCGAGCTGGTGCAGACCATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGAc > 1:985084/1‑150 (MQ=255) cAAGGCCGGCCGTGCCGAGCTGGTGCAGACCATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCa < 2:1109787/124‑1 (MQ=255) cAAGGCCGGCCGTGCCGAGCTGGTGCAGACCATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCa > 1:1109787/1‑124 (MQ=255) aGGCCGGCCGTGCCGAGCTGGTGCAGACCATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGGTCAG‑GGCGCGTTCACCGCGCCACTGATCgga < 1:379299/150‑2 (MQ=255) ccggccgTGCCGAGCTGGTGCAGACCATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTAcc > 1:501141/1‑150 (MQ=255) ggccgTGCCGAGCTGGTGCAGACCATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCgg < 1:1270941/150‑1 (MQ=255) ccgTGCCGAGCTGGTGCAGACCATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCt > 1:21906/1‑150 (MQ=255) gTGCCGAGCTGGTGCAGACCATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTgg < 2:21906/150‑1 (MQ=255) aGCTGGTGCAGACCAACGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGccacc < 1:1216535/150‑1 (MQ=255) gggCAAACCATCGGAAAGAAAGCCCTGCTCTACCTCAAGACCCCACAGCCGAACAAGCAGCTTTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCAc < 2:333946/148‑1 (MQ=255) gTGCAGACCATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCAc > 1:197104/1‑150 (MQ=255) gACCATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGa < 2:357337/120‑1 (MQ=255) gACCATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGa > 1:357337/1‑120 (MQ=255) gACCATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCAc < 1:92776/145‑1 (MQ=255) gACCATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCAc > 2:92776/1‑145 (MQ=255) aCCATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCTTTACAAGTAACGATAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGAAACCAACACGATGcg > 1:461207/1‑149 (MQ=255) ccATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCg < 1:767657/150‑1 (MQ=255) cATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCg > 2:1299396/1‑149 (MQ=255) cATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCg < 1:1299396/149‑1 (MQ=255) aTCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACTTGTAACGGtggat > 2:101771/1‑82 (MQ=255) aTCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACTTGTAACGGtggat < 1:101771/86‑5 (MQ=255) ggCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGaaaa < 2:30788/150‑1 (MQ=255) gCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGaaaac > 1:1092603/1‑149 (MQ=255) gAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGAAAAGCCCa > 1:511753/1‑150 (MQ=255) aaaGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGAAAAGCCCAg < 2:511753/150‑1 (MQ=255) aaGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGAAAAGCCCAGc > 1:687713/1‑150 (MQ=255) cTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGAAAAGCCCAGCACCAGGAAGc < 2:501141/150‑1 (MQ=255) aCCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGAAAAGCCCAGCACCAGGAAGCAg > 2:1348606/1‑150 (MQ=255) gAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGAAAAGcc < 2:985794/127‑1 (MQ=255) gAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGAAAAGcc > 1:985794/1‑127 (MQ=255) ccACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTgg < 2:952346/97‑1 (MQ=255) ccACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTgg > 1:952346/1‑97 (MQ=255) aGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGAAAAGCCCAGCACCAGGAAGCAGAACATCTGCCAgcgc > 1:606161/1‑150 (MQ=255) aaCAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTggg > 2:800293/1‑89 (MQ=255) aaCAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTggg < 1:800293/89‑1 (MQ=255) cAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGAAAAGCCCAGCACCAg > 2:1250941/1‑121 (MQ=255) cAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGAAAAGCCCAGCACCAg < 1:1250941/121‑1 (MQ=255) tgcAACATCCACCATTACAAGTAACGGTAGCCCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACAAGCACGATGCCGGAAAAGCCCAGCACCAGGAAGCAGAACAACTGCCAGAGCTAGCCCACGGAAATAcc > 2:670775/3‑150 (MQ=255) cAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGcc < 1:187709/91‑1 (MQ=255) cAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGcc > 2:187709/1‑91 (MQ=255) aaCATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGAAAAGCCCAGCACCAGGAAGCAGAACATCTGCCAGCGCTCGCCCACg < 1:389380/139‑1 (MQ=255) aaCATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGAAAAGCCCAGCACCAGGAAGCAGAACATCTGCCAGCGCTCGCCCACg > 2:389380/1‑139 (MQ=255) aaCATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGAAAAGCCCAGCACCAGGAAGCAGAACATCTGCCAGCGCTCGCCCACGGAAATACCGTa > 1:1012893/1‑150 (MQ=255) cATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTAGCGGCTGGGCCACCAGCAAGATGCCGGAAAAGCCCAGCACCAGGAAGCAGAACATCTGCCAGCGCTCGCCCACGGAAATACCGTAgc < 2:499534/150‑1 (MQ=255) aTCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGAAAAGCCCAGCACCAGGAAGCAGAACATCTGCCAGCGCTCGCCCACGGAAATACCGTAgcg > 1:1253618/1‑150 (MQ=255) cACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGAAAAGCCCAGCACCAGGAAGCAGAACATCTGCCAGCGCTCGCCCACGGAAATACCGTAGCGCaa > 2:1299750/1‑150 (MQ=255) cACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGAAAAGCCCAGCACCAGGAAGCAGAACATCTGCCAGCGCTCGCCCACGGAAATACCGTAGCGCaa > 2:957425/1‑150 (MQ=255) aCCGTTACTTGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGAAAAGCCCAGCACCAGGAAGCAGAACATCTGCCAGCGCTCGCCCACGGaa < 1:219528/135‑1 (MQ=255) aCCGTTACTTGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGAAAAGCCCAGCACCAGGAAGCAGAACATCTGCCAGCGCTCGCCCACGGaa > 2:219528/1‑135 (MQ=255) ccGTTACTTGTAACGGTGGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGAAAAGCCCAGCACCa > 1:930361/1‑99 (MQ=255) ccGTTACTTGTAACGGTGGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGAAAAGCCCAGCACCa < 2:930361/99‑1 (MQ=255) aCAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGAAAAGCCCAGCACCAGGAAGCAGAACATCTGCCAGCGCTCGCCCACGGAAATACCGTAGCGCAAGGTGTaa < 2:606161/150‑1 (MQ=255) cAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGc > 1:1351599/1‑75 (MQ=255) cAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGc < 2:1351599/75‑1 (MQ=255) | GGAAGACCGCGAAGAACGCGCCGAGACCATCGCCGAGCTGTGCAAGGCCGGCCGTGCCGAGCTGGTGCAGACCATCGGCAAGAAAGCCCTGATCTACCGCAAGAACCCACAGCCGAACAAGCAGCTGTCCAACATCCACCGTTACAAGTAACGGTAGCTCCGATCAGTGGCGCGGTGAACGCGCC‑CTGACCGGTACCGGCTGGGCCACCAGCACGATGCCGGAAAAGCCCAGCACCAGGAAGCAGAACATCTGCCAGCGCTCGCCCACGGAAATACCGTAGCGCAAGGTGTAA > NC_002947/5367685‑5367977 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |