| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,430,474 | C→T | 9.6% | intergenic (‑108/+53) | PP_4769 ← / ← PP_4770 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,430,474 | 0 | C | T | 9.6% | 239.8 / 9.7 | 89 | intergenic (‑108/+53) | PP_4769/PP_4770 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (31/48); new base T (4/5); total (35/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTAGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTGCCCCAGCCACCGTT > NC_002947/5430325‑5430622 | gtagAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACATCCGTGGGAGCGGGCGTGc < 1:1183916/150‑1 (MQ=255)gtagAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGc > 1:759888/1‑150 (MQ=255) tagAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCAGCGTGCTGACCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGcc > 2:349704/1‑150 (MQ=255) gTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGa < 2:89362/150‑1 (MQ=255) cggtgggttcttctcggacgacgattcttacgtctgacaggtctggcatactgctggcatttccgggggcgctttgcgccccttcgcggacacgcccgctcccacaggtatcgcgcgtacacccgtgggagcgggcgtgCCCGCGAAgg‑‑g < 1:777125‑M2/11‑1 (MQ=255) ggtgggttcttctcggacgacgattcttacgtctgacaggtctggcatactgctggcatttccgggggcgctttgcgccccttcgcggacacgcccgctcccacaggtatcgcgcgtacacccgtgggagcgggcgtgCCCGCGAAgg‑‑gg < 1:1383040‑M2/12‑1 (MQ=255) cacaTCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑Ggc < 1:1413392/150‑1 (MQ=255) aTCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCa > 1:331826/1‑150 (MQ=255) cGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCa‑aa < 2:494466/150‑1 (MQ=255) gCGAACAGCGGCATCTTTTTCACCTGGGAACCTCATTTTTGGCCGGAAGTGCCGGGGGGCTGATGCGCACCCCCTTCCGGACACGCCCGCTCCCGCATGTTG‑CTCGCGTACCCCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAgc < 1:174452/150‑1 (MQ=255) gCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGAGGCTGCTGCGCAGACTGGCGCGTACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAgc > 1:531075/1‑150 (MQ=255) aCAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑Gccc < 2:1018276/150‑1 (MQ=255) acgacgattcttacgtctgacaggtctggcatactgctggcatttccggggggctgctgcgcagaccttcgcggaCACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑Gccccc > 1:905220‑M1/76‑150 (MQ=255) gATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAGGG‑‑GGCGCT‑TTGC‑Gccccttcgcg < 1:1348985/150‑7 (MQ=255) gATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGGA‑AAGC‑GCACCC‑GGaaa > 1:416270/1‑150 (MQ=255) gATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGaaa < 2:19216/150‑1 (MQ=255) gATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGaaa < 1:1323952/150‑1 (MQ=255) cTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGc < 1:343229/150‑1 (MQ=255) cTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGc > 2:1186944/1‑150 (MQ=255) cTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGc > 2:366698/1‑150 (MQ=255) cTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGc < 1:1109872/150‑1 (MQ=255) tttttCACCTGGGAACCTCATTTTTGTTTTTGTGTTCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGcc > 2:51979/1‑150 (MQ=38) tttttCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGcc > 2:1377317/1‑150 (MQ=255) tttttCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGcc > 1:151144/1‑150 (MQ=255) ttttCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCca > 2:442128/1‑150 (MQ=255) tttCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCTCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTCCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCcag < 1:1155206/150‑1 (MQ=255) tttCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCcag < 2:968851/150‑1 (MQ=255) tCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGTGCA‑AAGC‑GCCCCC‑GGAAATGCcagca < 1:140546/150‑1 (MQ=255) ccTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGTGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTa < 1:1244056/150‑1 (MQ=255) cTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAgg < 2:820538/117‑1 (MQ=255) cTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAgg > 1:820538/1‑117 (MQ=255) tGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATg > 2:105906/1‑150 (MQ=255) tGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATg < 1:511431/150‑1 (MQ=255) gAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCa < 1:949232/150‑1 (MQ=255) aaCCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAg > 1:1349378/1‑150 (MQ=255) cTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGAcc > 2:1350120/1‑150 (MQ=255) tCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCt < 1:857623/150‑1 (MQ=255) aTTTTTGGCCTGGAGTGCCGGGGGGCTGCGGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGACCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGt < 1:933233/150‑1 (MQ=255) ccTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTa < 1:1377317/150‑1 (MQ=255) cTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGCGCCCGCGAAGG‑‑GGCGCA‑AAgc‑gc < 2:1364670/109‑1 (MQ=255) cTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGCGCCCGCGAAGG‑‑GGCGCA‑AAgc‑gc > 1:1364670/1‑109 (MQ=255) cTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCCGACCCGCCCAATCCCTCAGGTAT‑CGCGCGTACACGCGTGGTAGTTGTGGTGTCGGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTaa < 2:518636/150‑1 (MQ=255) tGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCca < 1:224562/122‑1 (MQ=255) tGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCca > 2:224562/1‑122 (MQ=255) gAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGaa > 1:1061887/1‑150 (MQ=255) tGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGt < 1:70356/135‑1 (MQ=255) tGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGt > 2:70356/1‑135 (MQ=255) tGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGAc < 2:362056/140‑1 (MQ=255) tGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGAc > 1:362056/1‑140 (MQ=255) ccGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAAtcgtc < 1:366698/150‑1 (MQ=255) ccGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAAtcgtc < 1:105906/150‑1 (MQ=255) gggggCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCgtcgtc < 1:1368785/150‑1 (MQ=255) gggggcgctttgcgccccttcgcgggcacgcccgctcccacgggtgtacgcgcgatacctgtgggagcgggcgtgTCCGCGAAGGTCTGCGCAGCAGC‑‑CCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATcgtcgt > 1:905220‑M2/76‑150 (MQ=255) ggCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCga < 1:442128/150‑1 (MQ=255) tgctgcGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGAc > 1:726079/1‑129 (MQ=255) tgctgcGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGAc < 2:726079/129‑1 (MQ=255) tgctgcGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCga > 1:1147578/1‑147 (MQ=255) tgctgcGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCga < 2:1147578/147‑1 (MQ=255) gctgcGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCATACCTGTCAGACGTAAGAATCGTCGTCCGagaag < 1:983389/150‑1 (MQ=255) gcgcAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAAc < 1:924121/150‑1 (MQ=255) cAGACCTTCGCGGACACGCCCGCTATCACTGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCa < 1:1019/150‑1 (MQ=255) gACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑CGAGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCAcc < 2:759888/150‑1 (MQ=255) ccccttcgcgggCACGCCCGCTCCCACGGGTGTACGCGCG‑ATACCTGTGGGAGCGGGCGTGTCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCAcc < 1:1383040‑M1/138‑1 (MQ=255) cccttcgcgggCACGCCCGCTCCCACGGGTGTACGCGCG‑ATACCTGTGGGAGCGGGCGTGTCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCg < 1:777125‑M1/139‑1 (MQ=255) cTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTc < 1:1186944/150‑1 (MQ=255) cgGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGc > 2:109571/1‑150 (MQ=255) CCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCaaaa < 1:862611‑M1/150‑1 (MQ=255) CCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCaaaa < 1:763531‑M1/150‑1 (MQ=255) CCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCaaaa > 2:1349378‑M1/1‑150 (MQ=255) CCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCg < 1:395494‑M1/150‑1 (MQ=255) CCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGt < 2:719070‑M1/150‑1 (MQ=255) ccacgggtgtacgcgcgatacctgtgggagcgggcgtgCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTa > 2:1116388‑M2/39‑100 (MQ=255) ccacgggtgtacgcgcgatacctgtgggagcgggcgtgCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTa < 1:1116388‑M2/62‑1 (MQ=255) ccacgggggtacgcgcgatacctgtgggagcgggcgtgTCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACAGt > 1:494934‑M2/39‑150 (MQ=255) cacgggtgtacgcgcgatacctgtgggagcgggcgtgCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGAc > 1:675299‑M2/38‑87 (MQ=255) cacgggtgtacgcgcgatacctgtgggagcgggcgtgCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGAc < 2:675299‑M2/50‑1 (MQ=255) ACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCg < 1:837379‑M1/150‑1 (MQ=255) ACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCg > 2:231212‑M1/1‑150 (MQ=255) acgggtgtacgcgcgatacctgtgggagcgggcgtgTCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGcc > 1:286816‑M2/37‑137 (MQ=255) acgggtgtacgcgcgatacctgtgggagcgggcgtgTCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGcc < 2:286816‑M2/101‑1 (MQ=255) aGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGc > 1:52576/1‑150 (MQ=255) gtgtacgcgcgatacctgtgggagcgggcgtgTCCGCGAAGG‑‑TCTGCG‑CAGCAGCCCCCGGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGc > 2:1341533‑M2/33‑150 (MQ=255) cgTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGccc < 1:53168/150‑1 (MQ=255) cgTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGccc < 2:837379/150‑1 (MQ=255) cgTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGccc < 1:51979/150‑1 (MQ=255) tACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTg < 2:395494/150‑1 (MQ=255) ccGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCAc > 1:988794/1‑150 (MQ=255) ccGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGCCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCAc > 1:457120/1‑150 (MQ=255) gtgagagcgggcgtgCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTg < 2:387594‑M2/135‑1 (MQ=255) cgggcgtgTCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTGCCCCAGc < 2:777125‑M2/142‑1 (MQ=255) gcgtgCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTGCCCCAGCCAc > 1:344110‑M2/6‑150 (MQ=255) gCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTGCCCCAGCCACCGtt > 1:1176628‑M2/2‑150 (MQ=255) | GTAGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGCGGACACGCCCGCTCCCACAGGTAT‑CGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGG‑‑GGCGCA‑AAGC‑GCCCCC‑GGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTGCCCCAGCCACCGTT > NC_002947/5430325‑5430622 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |