Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,486,760 | T→A | 7.0% | L14* (TTG→TAG) ‡ | PP_4824 → | two‑component system sensor histidine kinase/response regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,486,760 | 0 | T | A | 7.0% | 178.6 / 4.6 | 58 | L14* (TTG→TAG) ‡ | PP_4824 | two‑component system sensor histidine kinase/response regulator |
Reads supporting (aligned to +/- strand): ref base T (24/29); new base A (2/2); total (26/32) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.83e-01 |
GCGGCATCCGGCTCGTCGACAGGGCCCGGAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCA‑CATCG‑GCCAAG‑AAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCAGCCCACTGCCTCTCGCCGACC > NC_002947/5486617‑5486906 | gCGGCATCCGGCTCGTCGACAGGGCCCGGAATGGGCCTTGCCTTCGACTTGGCGCGCCTCGCATAGTGAGTACCCGGCA‑CATCG‑GCCAAG‑AAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGAc < 1:1029023/150‑1 (MQ=255) cGGCATCCGGCTCGTCGACAGGGCCCGGAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCA‑CATCG‑GCCAAG‑AAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGAcc < 2:436257/150‑1 (MQ=255) aTCCGGCTCGTCGACAGGGCCCGGCATGGGCCTTGCCTTCGACTTTGCGCGCCGCGCCTAGTGAGTACCCGGCA‑CATCG‑GCCAAG‑AAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTAAGCTTGCTGACCCTGc > 2:1314469/1‑150 (MQ=255) cGGCTCGTCGACAGGGCCCGGAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCA‑CATCG‑GCCAAG‑AAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGctct < 2:896820/150‑1 (MQ=255) gCTCGTCGACAGGGCCCGGAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCA‑CATCG‑GCCAAG‑AAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGc > 2:247115/1‑150 (MQ=255) cTCGTCGACAGGGCCCGGAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCA‑CATCG‑GCCAAG‑AAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCa < 1:863974/150‑1 (MQ=255) cTCGTCGACAGGGCCCGGAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCA‑CATCG‑GCCAAG‑AAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCa < 1:1205288/150‑1 (MQ=255) aaCAGGGCCCAGAATGTGCGTTGCCCTCGACGTGGCGCGCCGCGCATAGTGAGTACCCGGCA‑CATCG‑GCCAAG‑AAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTc < 2:553834/149‑1 (MQ=255) ggAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCA‑CATCG‑GCCAAG‑AAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGc > 1:1094659/1‑150 (MQ=255) cttgccttCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCA‑CATCG‑GCCAAG‑AAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGa < 1:701612/150‑1 (MQ=255) gACTTGGCGCGCCGCGCATAGTGAGTACCCGGCA‑CATCG‑GCCAAG‑AAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGc < 2:112143/115‑1 (MQ=255) gACTTGGCGCGCCGCGCATAGTGAGTACCCGGCA‑CATCG‑GCCAAG‑AAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGc > 1:112143/1‑115 (MQ=255) gACTTGGCGCGCCGCGCATAGTGAGTACACGGCACCATGGATCCTAGTAATGGACT‑‑G‑AGTGCTTCTGCTTCGCAATGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTg < 1:673719/150‑1 (MQ=255) cTTGGCGCGCCGCGCATAGTGAGTACCCGGCA‑CATCG‑GCCAAG‑AAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTGGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGa < 1:351704/150‑1 (MQ=255) gcgccgcgcATAGTGAGTACCCGGCA‑CATCG‑GCCAAG‑AAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCAAGCTGAc < 1:1418357/97‑1 (MQ=255) gcgccgcgcATAGTGAGTACCCGGCA‑CATCG‑GCCAAG‑AAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCAAGCTGAc > 2:1418357/1‑97 (MQ=255) gAGTACCCGGCA‑CATCG‑GCCAAG‑AAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAg > 1:505632/1‑150 (MQ=255) aGTACCCGGCA‑CATCG‑GCCAAG‑AAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCCGCTTCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAgg < 2:201008/150‑1 (MQ=255) ccGGCA‑CATCG‑GCCCAG‑AAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTTGACCGTTCTGCTCCACGAGCACGCCAAc > 2:206194/1‑150 (MQ=255) ccGGCA‑CATCG‑GCCAAG‑AAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCAGGCTGCGGCCGAACATGACGGTGGCTGGACCg < 2:382541/127‑1 (MQ=255) ccGGCA‑CATCG‑GCCAAG‑AAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCAGGCTGCGGCCGAACATGACGGTGGCTGGACCg > 1:382541/1‑127 (MQ=255) cAAG‑AAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCg > 2:105136/1‑150 (MQ=255) aag‑aagGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTTAGCGa > 2:537375/1‑150 (MQ=255) aag‑aagGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGa < 1:303575/146‑1 (MQ=255) aag‑aagGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGa > 2:303575/1‑146 (MQ=255) aag‑aagGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGa > 2:966190/1‑150 (MQ=255) g‑aagGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGAtg > 1:315305/1‑150 (MQ=255) g‑aagGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCAAGCTGAc < 1:193424/61‑1 (MQ=255) g‑aagGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCAAGCTGAc > 2:193424/1‑61 (MQ=255) aagGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGAtgt < 2:120361/150‑1 (MQ=255) aagGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGAtgt > 1:632809/1‑150 (MQ=255) aagGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCCGCTGTTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGAtgt < 1:247115/150‑1 (MQ=255) agGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGAtgtg > 1:248620/1‑150 (MQ=255) ttttgTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGAAGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGa < 1:206194/146‑1 (MQ=255) gTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAg > 2:1309622/1‑150 (MQ=255) gTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGAcc > 1:787224/1‑96 (MQ=255) gTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGAcc < 2:787224/96‑1 (MQ=255) gTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAg > 1:1378222/1‑127 (MQ=255) gTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAg < 2:1378222/127‑1 (MQ=255) gCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCaa < 1:721580/150‑1 (MQ=255) cTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAAc < 1:1239824/150‑1 (MQ=255) ggATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGAc < 2:893363/82‑1 (MQ=255) ggATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGAc > 1:893363/1‑82 (MQ=255) ttGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCa < 2:315305/150‑1 (MQ=255) tGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCAg < 2:632809/150‑1 (MQ=255) gCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCAGc < 2:248620/150‑1 (MQ=255) tCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCAGc < 2:128980/147‑1 (MQ=255) tCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCAGc > 1:128980/1‑147 (MQ=255) tCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCAGCCCa < 1:1309622/150‑1 (MQ=255) tCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAgg > 1:93920/1‑81 (MQ=255) tCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAgg < 2:93920/81‑1 (MQ=255) tCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCAGCCCACTGCCTCTCGCCg > 2:1145505/1‑150 (MQ=255) aGCTTGCTGGCCCTGCTCTGCATGTTTCCGGCTGCCGCCCAACATGACGGTGGCTGCACCGTTCTGCAAGTCGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCAGCCCACTGCCTCTCGCCGAc < 1:1314469/150‑1 (MQ=255) aGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCAGCCCACTGCCTCTCGcc > 2:400152/1‑147 (MQ=255) aGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCAGCCCACTGCCTCTCGcc < 1:400152/147‑1 (MQ=255) gCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCa < 2:861472/124‑1 (MQ=255) gCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCa > 1:861472/1‑124 (MQ=255) gCTTGCTAACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCAGCCCACTGCCTCGCGCCGAcc > 1:713476/1‑150 (MQ=255) | GCGGCATCCGGCTCGTCGACAGGGCCCGGAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCA‑CATCG‑GCCAAG‑AAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCAGCCCACTGCCTCTCGCCGACC > NC_002947/5486617‑5486906 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |