Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,610,676 | G→A | 100% | E14K (GAA→AAA) | emrE → | small multidrug resistance protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,610,676 | 0 | G | A | 100.0% | 170.1 / NA | 50 | E14K (GAA→AAA) | emrE | small multidrug resistance protein |
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (27/23); total (27/23) | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
CAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCGCAGCATTCCGGTGGGGATTGCCTACGCCATC > NC_002947/5610529‑5610822 | cAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCaaa < 1:876013/150‑1 (MQ=255) cAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCaaa < 1:724179/150‑1 (MQ=255) aaGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAg > 1:883489/1‑150 (MQ=255) aCTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCAAGCTCAGTAACGGAGGATCCTGACATCAATGAGTCTATTTAGTTCGCCATTGCCTGGTGGGCCAAAGTCATCGcc > 1:1384714/1‑150 (MQ=255) cAACCTATCTCCCATATCGATAGGTAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGa > 1:1034966/1‑150 (MQ=255) ccTATCTCCCATATCGATAGGTAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAgg < 2:909460/150‑1 (MQ=255) ccTATCTCCCATATCGATAGGTAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCATATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAgg > 2:816355/1‑150 (MQ=255) cTATCTCCCATATCGATAGGTAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGc > 1:1202696/1‑150 (MQ=255) tATCTCCCATATCGATAGGTAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCg > 2:506031/1‑150 (MQ=255) tctcCCATATCGATAGGTAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGt < 1:1324703/150‑1 (MQ=255) tctcCCATATCGATAGGTAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGt < 1:506031/150‑1 (MQ=255) ccATATCGATAAGTTATGATGTTACCCAATCCAGGCAACTTCAAGAATCCCCGCTCAGTAACGGAGGATCCTACAATGAATGCCTCTACCTACCTCGCCATTGACATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGaaa < 2:605023/150‑1 (MQ=255) cATATCGATAGGTAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCATATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGACAg < 1:816355/150‑1 (MQ=255) tCGATCGGTAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCTCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCt < 2:1034966/150‑1 (MQ=255) tGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCaaa < 2:206167/101‑1 (MQ=255) cccATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCActgc > 2:1063087/1‑150 (MQ=255) caaTCCAGGAAACGGCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCTTGAATTCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCActgct > 2:764650/3‑150 (MQ=255) cATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGc < 1:1264735/132‑1 (MQ=255) cATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGc > 2:1264735/1‑132 (MQ=255) aTCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCActgctgc < 2:883489/150‑1 (MQ=255) ggCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGAtg > 1:22040/1‑150 (MQ=255) gCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGAtgg > 1:932429/1‑150 (MQ=255) aaCGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGAtggtg > 2:1130400/1‑150 (MQ=255) tCTATAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTg > 2:1307792/1‑150 (MQ=255) ccGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGGCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCAt > 2:46011/1‑150 (MQ=255) tAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCt < 2:267419/150‑1 (MQ=255) cGGAGGATCCTGCCATGCGTGGCTAGGCCGACCTCGCCATTGCCATCTGCGCCAAAGTCATCGATCTTTCCGCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGa < 1:668034/150‑1 (MQ=255) gaggaTCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTTCATCGAGGCGGTgg < 1:1061321/85‑2 (MQ=37) gaggaTCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATg < 2:121275/150‑1 (MQ=255) gaggaTCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATg > 1:121275/1‑150 (MQ=255) cTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGc > 1:406129/1‑150 (MQ=255) tGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCt > 2:869718/1‑84 (MQ=255) tGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCt < 1:869718/84‑1 (MQ=255) tGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCt > 1:115492/1‑150 (MQ=255) gCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCtg < 2:22040/150‑1 (MQ=255) gaagAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCAACGCCTCGATGAAGGCGGTGAAAGGCCTGAGCAAGCCGTAACCACTGCTGCTGATGGTGTGTGGTTATGACATTGGGGGGTGGAGGCTGACGCtggg > 1:760906/4‑149 (MQ=255) aTGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTAt > 1:931162/1‑120 (MQ=255) aTGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTAt < 2:931162/120‑1 (MQ=255) ccTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCgca < 1:1063087/150‑1 (MQ=255) ccTATACCTACCTCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCgca < 1:1307792/150‑1 (MQ=255) tacctCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCGCAGCATTCCg < 2:115492/150‑1 (MQ=255) acctCGCCATTGCCATCTGCGCCAAAGTCATCGTCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTAt > 1:304390/1‑104 (MQ=255) acctCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTAt < 2:304390/104‑1 (MQ=255) cctCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCGCAGCATTCCGGt < 1:1056479/150‑1 (MQ=255) ctCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCActgctgc > 2:1287588/1‑85 (MQ=255) ctCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCActgctgc < 1:1287588/85‑1 (MQ=255) ctCGCCATTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCGCAGCATTCCGGTg < 2:932429/150‑1 (MQ=255) aTTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCGCAGCATTCCGGTGGGGAtt > 2:320871/1‑150 (MQ=255) aTTGCCATCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCGCAGCATTCCGGTGGGGAtt > 2:968333/1‑150 (MQ=255) tCTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCGCAGCATTCCGGTGGGGATTGCCTACg > 2:1186508/1‑150 (MQ=255) cTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTg > 2:556514/1‑109 (MQ=255) cTGCGCCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTg < 1:556514/109‑1 (MQ=255) gcCAAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCGCAGCATTCCGGTGGGGATTGCCTACGCCATc > 2:309271/1‑150 (MQ=255) | CAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCGCAGCATTCCGGTGGGGATTGCCTACGCCATC > NC_002947/5610529‑5610822 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |