Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,701,278 | C→G | 19.1% | intergenic (+20/‑43) | phaA → / → phaB | poly(3‑hydroxyalkanoate) polymerase/poly(3‑hydroxyalkanoate) depolymerase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,701,278 | 0 | C | G | 19.1% | 95.8 / 18.0 | 42 | intergenic (+20/‑43) | phaA/phaB | poly(3‑hydroxyalkanoate) polymerase/poly(3‑hydroxyalkanoate) depolymerase |
Reads supporting (aligned to +/- strand): ref base C (18/16); new base G (5/3); total (23/19) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 7.09e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.56e-01 |
CTGGTGGTTGCACTGGCAGAGTTGGCTGGGCGAGCGTGCCGGCGCGCTGAAAAAGGCACCGACCCGCCTGGGCAACCGTACCTATGCCGCCGGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTCGAGCTGGACAACCAGTCCATCCGCACCGCTGTTCGCCCCGGCAAGCCGCACCTGACGCCGTTGCTGA > NC_002947/5701129‑5701417 | cTGGTGGTTGCACTGGCAGAGTTGGCTGGGCGAGCGTGCCGGCGCGCTGAAAAAGGCACCGACCCGCCTGGGCAACCGTACCTATGCCGCCGGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGcc > 1:1403762/1‑150 (MQ=255) gtggtTGCACTGGCAGAGTTGGCTGGGCGAGCGTGCCGGCGCGCTGAAAAAGGCACCGACCCGCCTGGGCAACCGTACCTATGCCGCCGGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGc > 1:1160562/1‑150 (MQ=255) aCTGGCAGAGTTGGCTGGGCGAGCGTGCCGGCGCGCTGAAAAAGGCACCGACCCGCCTGGGCAACCGTACCTATGCCGCCGGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGcc > 2:758224/1‑150 (MQ=255) gCAGAGTTGGCTGGGCGAGCGTGCCGGCGCGCTGAAAAAGGCACCGACCCGCCTGGGCAACCGTACCTATGCCGCCGGCGAAGCCTCCCCAGGCATCTACGTTGACGAGCGTTGAGTTACAGCGCCGTGGCGCCGTGCAGGCCGCCACgg < 2:519846/150‑1 (MQ=255) gCAGAGTTGGCTGGGCGAGCGTGCCGGCGCGCTGAAAAAGGCACCGACCCGCCTGGGCAACCGTACCTATGCCGCCGGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACgg > 1:610595/1‑150 (MQ=255) cAGAGTTGGCTGGGCGAGCGTGCCGGCGCGCTGAAAAAGGCACCGACCCGCCTGGGCAACCGTACCTATGCCGCCGGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGgt < 1:142507/150‑1 (MQ=255) gagTTGGCTGGGCGAGCGTGCCGGCGCGCTGAAAAAGGCACCGACCCGCCTGGGCAACCGTACCTATGCCGCCGGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGgtgt < 1:1055331/150‑1 (MQ=255) gTTGGCTGGGCGAGCGTGCCGGCGCGCTGAAAAAGGCACCGACCCGCCTGGGCAACCGTACCTATGCCGCCGGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGttt < 2:1403762/150‑1 (MQ=255) gCTGGGCGAGCGTGCCGGCGCGCTGAAAAAGGCACCGACCCGCCTGGGCAACCGTACCTATGCCGCCGGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACtt > 2:715750/1‑150 (MQ=255) gggCGAGCGTGCCGGCGCGCTGAAAAAGGCACCGACCCGCCTGGGCAACCGTACCTATGCCGCCGGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCAc < 2:1072051/150‑1 (MQ=255) gAGCGTGCCGGCGCGCTGAAAAAGGCACCGTCCCGCCTGGGCAACCGTACCTATGCCGCCGGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCaa < 1:246814/150‑1 (MQ=255) gCCTGGGCAACCGTACCTATGCCGCCGGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTCAg < 2:610595/150‑1 (MQ=255) cAACCGTACCTATGCCGCCGGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTc < 1:715750/150‑1 (MQ=255) ccGTACCTATGCCGCCGGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCta < 1:1070981/131‑1 (MQ=255) ccGTACCTATGCCGCCGGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCta > 2:1070981/1‑131 (MQ=255) cGTACCTATGCCGCCGGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTCGAGc < 1:758224/150‑1 (MQ=255) tACCTATGCCGCCGGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTCGAGCTg < 1:580868/150‑1 (MQ=255) tATGCCGCCGGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCGAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTCGAGCt > 2:1386968/1‑145 (MQ=255) tATGCCGCCGGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCGAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTCGAGCt < 1:1386968/145‑1 (MQ=255) tATGCCGCCGGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTCGAGCTGGACa > 2:285262/1‑150 (MQ=255) tATGCCGCCGGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGCCGTGCAGGCCGCCAc > 1:1005850/1‑81 (MQ=37) tATGCCGCCGGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGCCGTGCAGGCCGCCAc < 2:1005850/81‑1 (MQ=37) cgccgGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCt > 2:1058714/1‑64 (MQ=255) cgccgGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCt < 1:1058714/64‑1 (MQ=255) gCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTCGAGCTGGACAACCAGTCCAt > 1:526925/1‑150 (MQ=255) cccAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTCGAGCTGGCTAACCAGTCCATCCGCACCGCt > 2:108676/1‑150 (MQ=255) cccAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTCGAGCTGGACAAc > 1:238523/1‑132 (MQ=255) cccAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTCGAGCTGGACAAc < 2:238523/132‑1 (MQ=255) cAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTc > 2:842847/1‑109 (MQ=255) cAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTc < 1:842847/109‑1 (MQ=255) cTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTGCCCCAAGAGTCACGTTCATACCGCAACCCTATATTTTCAGGACCGTGGAGCTGGACAACCGGTCCATCCGCACCGCTGTTCGcccc > 2:377055/1‑150 (MQ=255) cTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTCGAGCTGGACAAcc > 1:917680/1‑124 (MQ=255) cTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTCGAGCTGGACAAcc < 2:917680/124‑1 (MQ=255) gTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTCGAGCTGGACAACCAGTCCATCCGCACCGCTGTTCGCCCCGGCAAGCCGCACCt > 1:775824/1‑150 (MQ=255) ttGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTCGAGCTGGACAACCAGTCCATCCGCACCGCTGTTCGCCCCGGCAAGCCGCACCTg > 2:844375/1‑150 (MQ=255) ttACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTCGAGCTGGACAACCAGTCCATCCGCACCGCTGTTCGCCACGGCAAGCCGCACCTGACGcc > 2:731584/1‑150 (MQ=255) ggcgcCGTGCAGGCCGCCACGGCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTCGAGCTGGACAACCAGTCCATCCGCACCGCTGTTCACCCCGGCAAGCCACACCTGACGCCGCTg > 2:993731/2‑150 (MQ=255) caccGTGGCGCCGTGCAGGCCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTCGAGCTGGACAACCAGTCCATCCGCACCGCTGTTCGCCCCGGCAAGCCGCACCTGACGCCGTTGCt > 1:190731/3‑150 (MQ=255) caccGTGGCGCCGTGCAGGCCGCCACGGCGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTCGAGCTGGACAACCAGTCCATCCGCACCGCTGTTCGCCCCGGCAAGCCGCACCTGACGCCGTTGCt > 2:1338648/3‑150 (MQ=255) accGTGGCGCCGTGCAGGCCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTCGAGCTGGACAACCAGTCCATCCGCACCGCTGtt < 2:267155/116‑1 (MQ=255) accGTGGCGCCGTGCAGGCCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTCGAGCTGGACAACCAGTCCATCCGCACCGCTGtt > 1:267155/2‑117 (MQ=255) accGTGGCGCCGTGCAGGCCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTCGAGCTGGACAACCAGTCCATCCGCACCGCTGTTCGCCCCGGCAAGCCGCACCTGACGCCGTTGCTg > 1:939781/2‑150 (MQ=255) ccGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTCGAGCTGGACAACCAGTCCATCCGCACCGCTGTTCGCCCCGGCAAGCCGCACCTGACGCCGTTGCTGa < 1:565290/150‑1 (MQ=255) | CTGGTGGTTGCACTGGCAGAGTTGGCTGGGCGAGCGTGCCGGCGCGCTGAAAAAGGCACCGACCCGCCTGGGCAACCGTACCTATGCCGCCGGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGAGTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTCGAGCTGGACAACCAGTCCATCCGCACCGCTGTTCGCCCCGGCAAGCCGCACCTGACGCCGTTGCTGA > NC_002947/5701129‑5701417 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |