Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,706,643 | T→A | 6.4% | L202Q (CTG→CAG) | PP_5009 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,706,643 | 0 | T | A | 6.4% | 190.8 / 4.0 | 62 | L202Q (CTG→CAG) | PP_5009 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (31/27); new base A (2/2); total (33/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.48e-01 |
AAGACAGCCAAGTCTCGCGCATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACC > NC_002947/5706505‑5706792 | aaGACAGCCAAGTCTCGCGCATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAgg < 2:718650/150‑1 (MQ=255) aCAGCCAAGTCTCGCGCATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGa > 1:876466/1‑150 (MQ=255) ccAAGTCTCGCGCATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACa > 2:1382539/1‑150 (MQ=255) ccAAGTCTCGCGCATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACa > 1:844248/1‑150 (MQ=255) tctcGCGCATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCAGGCTGTCgtg > 1:1210061/1‑135 (MQ=255) tctcGCGCATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCAGGCTGTCgtg > 1:1211536/1‑135 (MQ=255) tctcGCGCATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCAGGCTGTCgtg < 2:1211536/137‑3 (MQ=255) tctcGCGCATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCAGGCTGTCgtg < 2:1210061/137‑3 (MQ=255) gcgcATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGa < 2:651591/137‑1 (MQ=255) gcgcATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGa > 1:651591/1‑137 (MQ=255) ctggctggAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGa > 2:837760/1‑123 (MQ=255) ctggctggAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGa < 1:837760/123‑1 (MQ=255) ggAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCgg < 2:284530/150‑1 (MQ=255) acacCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGc > 1:1303298/1‑115 (MQ=255) acacCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGc < 2:1303298/115‑1 (MQ=255) acCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGa < 1:632948/115‑1 (MQ=255) acCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGa > 2:632948/1‑115 (MQ=255) ccATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAATCTTTGCAGATTATGCAAAAGCTGCAATGTACGGGCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGcacaca < 1:804569/150‑1 (MQ=255) aaGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAg < 1:166815/105‑1 (MQ=255) aaGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAg > 2:166815/1‑105 (MQ=255) aaGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGc > 1:876249/1‑107 (MQ=255) aaGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGc < 2:876249/107‑1 (MQ=255) aaGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACATACCGtt < 1:518342/150‑1 (MQ=255) cTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTAccc > 2:111753/1‑150 (MQ=255) tGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCt > 2:533726/1‑150 (MQ=255) cATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTAc < 1:628355/150‑1 (MQ=255) cTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGAt > 2:185137/1‑150 (MQ=255) tCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGCACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGGTc > 1:352845/1‑150 (MQ=255) cGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCt < 1:618016/150‑1 (MQ=255) gagaACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTa > 1:1198262/1‑150 (MQ=255) agaACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTAt < 1:326315/150‑1 (MQ=255) gaACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTAtt > 2:111539/1‑150 (MQ=255) cctccctcGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCt < 2:844248/150‑1 (MQ=255) ctccctcGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACATGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCtc > 2:102166/1‑150 (MQ=255) ctccctcGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCggg > 2:197602/1‑117 (MQ=255) ctccctcGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCggg < 1:197602/117‑1 (MQ=255) ctcGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCtcatca < 1:1382539/150‑1 (MQ=255) gCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTg < 1:416998/140‑1 (MQ=255) gCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTg > 2:416998/1‑140 (MQ=255) gccaGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATcaccac > 2:174651/4‑150 (MQ=255) cTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGgc > 1:1382036/1‑150 (MQ=255) cTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGgc < 1:533726/150‑1 (MQ=255) gatgatGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGgcaaccgc > 2:471256/1‑150 (MQ=255) gatgatGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGgcaaccgc > 1:62168/1‑150 (MQ=255) tgatgCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGTTGCAGCACACGCCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGgcaaccgcaa < 1:174651/150‑1 (MQ=255) gCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACaa < 1:56851/66‑1 (MQ=255) gCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACaa > 2:56851/1‑66 (MQ=255) gCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCacacac > 2:640981/1‑98 (MQ=255) gCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCacacac < 1:640981/98‑1 (MQ=255) cAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTgg < 1:111753/150‑1 (MQ=255) aaaaGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGt > 2:1093412/1‑150 (MQ=255) aaGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTc < 1:1093412/150‑1 (MQ=255) ccTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTg > 2:353370/1‑150 (MQ=255) cTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACAACATCACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGAGTCTGGAATGCAAGCCCTGcggt > 1:317907/1‑150 (MQ=255) aCGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGc < 1:722047/93‑1 (MQ=255) aCGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGc > 2:722047/1‑93 (MQ=255) acacGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGCTTCGGTTTCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTtcgtcg > 1:1170135/1‑150 (MQ=255) cGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGcggttcggt > 2:224011/1‑141 (MQ=255) cGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGcggttcggt < 1:224011/141‑1 (MQ=255) cGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCa < 1:111539/150‑1 (MQ=255) gACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTtcgtc > 1:1352486/1‑145 (MQ=255) gACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTtcgtc < 2:1352486/145‑1 (MQ=255) tGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGAcc > 2:290943/1‑150 (MQ=255) | AAGACAGCCAAGTCTCGCGCATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACGGATGGCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGACC > NC_002947/5706505‑5706792 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |