Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,753,541 | T→G | 13.8% | intergenic (+46/‑320) | glnA → / → glnL | glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,753,541 | 0 | T | G | 13.8% | 114.6 / 14.6 | 53 | intergenic (+46/‑320) | glnA/glnL | glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG |
Reads supporting (aligned to +/- strand): ref base T (23/21); new base G (3/4); total (27/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 7.03e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.02e-01 |
ACGACTTCATCGATGCCTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCACCAAGACTTTCTG > NC_002947/5753395‑5753689 | acgacTTCATCGATGCCTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACGTGATCAAAACGGCCTCCCTCgg > 2:1108536/1‑150 (MQ=255) acgacTTCATCGATGCCTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCgg < 2:889174/150‑1 (MQ=255) acgacTTCATCGATGCCTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCgg < 2:257763/150‑1 (MQ=255) aTCGATGCCTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCgg > 1:548034/1‑142 (MQ=255) aTCGATGCCTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCgg < 2:548034/142‑1 (MQ=255) aTCGATGCCTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGt > 2:465455/1‑150 (MQ=255) aTCGATGCCTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGt > 1:330830/1‑150 (MQ=255) tCGATGCCTTCATCGAGCTTAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCGAGGGAGGCCGtt < 1:843748/150‑1 (MQ=255) cGATGCCTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCATACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGttt < 2:1029259/150‑1 (MQ=255) gCCTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGt < 2:799927/150‑1 (MQ=255) cATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCTTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGAACAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTg < 1:1149265/150‑1 (MQ=255) aTCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTgc > 1:1137169/1‑150 (MQ=255) aaGAGCGAAGAAGAAATCAAGGTCCATACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGc > 2:273751/1‑150 (MQ=255) gCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGaa < 2:182071/150‑1 (MQ=255) cGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGACTCCTGACTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAg < 1:884665/150‑1 (MQ=255) gaagaaATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACGTGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGcgcc < 1:1108536/150‑1 (MQ=255) gaagaaATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGcgcc < 2:1137169/150‑1 (MQ=255) gaaATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCt > 2:1423573/1‑150 (MQ=255) tCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGAtt > 1:916677/1‑150 (MQ=255) cTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCgg < 1:635285/92‑1 (MQ=255) cTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCgg > 2:635285/1‑92 (MQ=255) cTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCCCGGGAGGCCGTTTTTGTTTCTgc < 2:18959/112‑1 (MQ=255) cTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCCCGGGAGGCCGTTTTTGTTTCTgc > 1:18959/1‑112 (MQ=255) gCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCACCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCtt > 1:277306/1‑150 (MQ=255) aCGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCgg < 2:1418892/72‑1 (MQ=255) aCGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCgg > 1:1418892/1‑72 (MQ=255) gAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGt > 2:1221835/1‑122 (MQ=255) gAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGt < 1:1221835/122‑1 (MQ=255) aGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTGGTGCATTAAt < 1:465455/150‑1 (MQ=255) gCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTGGTGCACCAAtt < 2:916677/150‑1 (MQ=255) aGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTGGTGCATTAATTCACACCATGc < 2:330830/150‑1 (MQ=255) ctgctgATCTGATTGGCGCCTCGCACGGTCTTCATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTGGTGCATTAATTCACACCATGccc > 1:1107535/1‑150 (MQ=255) gctgATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTGGTGCATTAATTCACACCATGCCCTc > 2:440173/1‑150 (MQ=255) tgatTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCGAGGGAGGc > 1:413191/1‑52 (MQ=37) tgatTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCGAGGGAGGc < 2:413191/52‑1 (MQ=37) gatTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTc < 1:273751/150‑1 (MQ=255) ttGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGGCGCTGATTCGCCGGTCACGCTATGCTCTATCTTGGTGCATGAATTCACACCATGCCCTCAATTGGTccc > 1:654714/1‑150 (MQ=255) gcgcCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTg > 2:610992/1‑112 (MQ=255) gcgcCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTg > 2:611048/1‑112 (MQ=255) gcgcCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTg < 1:611048/112‑1 (MQ=255) gcgcCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTg < 1:610992/112‑1 (MQ=255) cGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTGGTGCAt > 1:460086/1‑107 (MQ=255) cGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTGGTGCAt < 2:460086/107‑1 (MQ=255) cGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAgg > 2:990852/1‑150 (MQ=255) cATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAAc < 1:440173/150‑1 (MQ=255) aTGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACg > 2:1083694/1‑150 (MQ=255) gATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGtt > 2:1183943/1‑150 (MQ=255) aTCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGttt > 2:1082920/1‑150 (MQ=255) aaaaCGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTACACGTTTCAc > 2:619109/1‑150 (MQ=255) aaCGGCCTCCCGAGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGctct < 2:1244250/80‑1 (MQ=38) aaCGGCCTCCCGAGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGctct > 1:1244250/1‑80 (MQ=38) aaCGGCCTCCCGAGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTGGt < 2:1048161/88‑1 (MQ=255) aaCGGCCTCCCGAGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTGGt > 1:1048161/1‑88 (MQ=255) ctccctcGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTg > 2:498443/1‑122 (MQ=255) ctccctcGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTg < 1:498443/122‑1 (MQ=255) cccctcGGGAGGCCGTTTTTGTTTCTGCGCAACTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTCTGCTCTATCTTGCTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCACCAAGACttt < 2:654714/149‑1 (MQ=255) ccctcGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAACAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCACCAAGACTTTc < 1:1143636/150‑1 (MQ=255) ccttGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCACCAAGACTTTCt > 1:1035273/1‑150 (MQ=255) ctcGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGGCTGTCACGCTATGCTCTATCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCACCAAGACTTTCTg > 1:968149/1‑150 (MQ=255) | ACGACTTCATCGATGCCTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATGATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTCTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTATCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCACCAAGACTTTCTG > NC_002947/5753395‑5753689 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |