| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,132,191 | C→G | 9.6% | G573A (GGC→GCC) | copA‑II ← | copper resistance protein A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,132,191 | 0 | C | G | 9.6% | 174.7 / 7.6 | 62 | G573A (GGC→GCC) | copA‑II | copper resistance protein A |
| Reads supporting (aligned to +/- strand): ref base C (27/27); new base G (3/3); total (31/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATGAAATTACCGTCCTCATCCTCCAGATCGCTCCACATTCCGTGGAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCTCGATGGTGCGCCCTGGTTCACGTCCATCTGGATCAATGAACGTGCTTCGCAGATCCGCATAGGTCAGGACACGACGTCCATTGTTGCGCAAGCCGATT > NC_002947/6132047‑6132337 | aTGAAATTACCGTCCTCATCCTCCAGATCGCTCCACATTCCGTGGAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGGCGTCa > 2:24923/1‑150 (MQ=255)aTGAAATTACCGTCCTCATCCTCCAGATCGCTCCACATTCCGTGGAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCa > 1:1367685/1‑150 (MQ=255) tGAAATTACCGTCCTCATCCTCCAGATCGCTCCACATTCCGTGGAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCaa > 1:634314/1‑150 (MQ=255) gAAATTACCGTCCTCATCCTCCAGATCGCTCCACATTCCGTGGAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGGCGTCaaa < 1:24923/150‑1 (MQ=255) aaaTTACCGTCCTCATCCTCCAGATCGCTCCACATTCCGTGGAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAAt > 2:928620/1‑150 (MQ=255) aTTACCGTCCTCATCCTCCAGATCGCTCCACATTCCGTGGAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGa < 1:1195805/150‑1 (MQ=255) gTCCTCATCCTCCAGATCGCTCCACATTCCGCGGCCGTGGAGTTGTGGATTCATCATGGCGTCGTTGACCAAAGTG‑TCTGGA‑ACGTTCGTGACTTGGTGTTGGCGTAGGGGTTCAGCATCGGAAAATTTGACACCGGCAGATGACCAGGc > 1:1391523/1‑150 (MQ=255) cTCATCCTCCAGATCGCTCCAGATTCCGTGGAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGaa < 2:359347/150‑1 (MQ=255) tCATCCTCCAGATCGCTCCACATTCCGTGGAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTc > 2:7539/1‑134 (MQ=255) tCATCCTCCAGATCGCTCCACATTCCGTGGAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTc < 1:7539/134‑1 (MQ=255) tCATCCTCCAGATCGCTCCACATTCCGTGGAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGc > 1:1055887/1‑146 (MQ=255) tCATCCTCCAGATCGCTCCACATTCCGTGGAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGc < 2:1055887/146‑1 (MQ=255) tCATCCTCCAGATCGCTCCACATTCCGTGGAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAAc > 1:754124/1‑150 (MQ=255) tCATCCTCCAGATCGCTCCACATTCCGTGGAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAAc > 1:432570/1‑150 (MQ=255) tcctccAGATCGCTCCACATTCCGTGGAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTtc < 2:754124/150‑1 (MQ=255) ctccAGATCGCTCCACATTCCGTGGAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTtctc > 2:147882/1‑150 (MQ=255) ctccAGATCGCTCCACATTCCGTGGAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTtct < 2:1382904/149‑1 (MQ=255) ctccAGATCGCTCCACATTCCGTGGAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTtct > 1:1382904/1‑149 (MQ=255) ccAGATCGCTCCACATTCCGTGGAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCa < 1:1421988/150‑1 (MQ=255) tCGCTCCACATTCCGTGGAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATgg < 2:1367685/150‑1 (MQ=255) cTCCACATTCCGTGGAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTtc < 2:428614/138‑1 (MQ=255) cTCCACATTCCGTGGAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTtc > 1:428614/1‑138 (MQ=255) cTCCACATTCCGTGGAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCt > 1:502034/1‑150 (MQ=255) tGGGGGTGGATGGGGGGAGTCATCATGGTGTCGTTGAACAAAGTGATTCGCAGCGGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTGGACGCCGGCAAAGGAGCAGGCGAACTTTTACAAAAGGCCC‑GTGAGATGCAGc > 2:510339/1‑150 (MQ=255) ggAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCt > 2:810857/1‑150 (MQ=255) ggTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCTCGa < 2:502034/150‑1 (MQ=255) tGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCTCGATg < 1:928620/150‑1 (MQ=255) atcatGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTtctc < 1:135979/107‑1 (MQ=255) atcatGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTtctc > 2:135979/1‑107 (MQ=255) atcatGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCt‑g < 1:1293060/118‑1 (MQ=255) atcatGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCt‑g > 2:1293060/1‑118 (MQ=255) tcatGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTgaga < 1:846353/122‑1 (MQ=255) tcatGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTgaga > 2:846353/1‑122 (MQ=255) tCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCCCCATAGGGCCT‑GTGAGATGCAGCTCGATGGTGCGCCCTGGTTCACGTCCATCt < 1:747505/150‑1 (MQ=255) cGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCTCGATGGTGCGCCCTGGTTCACGTCCATCTg < 2:634314/150‑1 (MQ=255) gTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCTCGAt > 1:1149196/1‑123 (MQ=255) gTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCTCGAt < 2:1149196/123‑1 (MQ=255) caaGTGCTTCGCAGACGCTC‑‑GCCCTATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCACCTCGCTGCTGCGCCCTGGTTCACGTCCATCTGGCTCAAtt > 2:527948/2‑149 (MQ=255) gTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCTCGATGGTGCGCCCTGGTTCACGTCCATCTGGATCAATGAAc < 1:147882/150‑1 (MQ=255) tccccATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCTCGATGGTGNGCCCTGGTTNACGTCCATNTGGATCAATGAACGTGCTTCGCAGATcc < 1:510339/147‑1 (MQ=255) ccATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCTCGATGGTGCGCCCTGGTTCACGTCCATCTGGATCAATGAACGTg < 2:236908/135‑1 (MQ=255) ccATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCTCGATGGTGCGCCCTGGTTCACGTCCATCTGGATCAATGAACGTg > 1:236908/1‑135 (MQ=255) ccATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGACGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCTCGATGGTGCGCCCTGGTTCACGTCCATCTGGATCAATGAACGTGCTTCGCAGATCCGCa > 1:98890/1‑150 (MQ=255) cATATTTGAGGCGTAGTGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCTCGATGGTGCGCCCTGGTTCACGTCCATCTGGATCAATGAACGTGCTTCGCAGATCCGCAt > 2:48173/1‑150 (MQ=255) cATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGAc < 1:1007260/53‑1 (MQ=255) cATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGAc > 2:1007260/1‑53 (MQ=255) ttGAGGCGTAGGGGTTCAGCATCGGACGATGTTTCGGCTTCAAATGACCCGGAGCACTT‑TTCACAGCACCTGGTGAGATGCAGCTCGATGGTGCGCCCTGGTTCACGTCCATCTGGATCAATGAACGTGCTTCGCAGATCCGCATAGGTc < 1:738678/150‑1 (MQ=255) gTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCTCGATGGTGCGCCCTGGTTCACGTCCATCTGGATCAATGAACGTGCTTCGCAGATCCGCATAGGTCAGGa < 2:1276348/147‑1 (MQ=255) gTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCTCGATGGTGCGCCCTGGTTCACGTCCATCTGGATCAATGAACGTGCTTCGCAGATCCGCATAGGTCAGGa > 1:1276348/1‑147 (MQ=255) aGGGGTTCAGCATCGGAAAATTTGACGACGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCTCGATGGTGCGCCCTGGTTCACGTCCATCTGGATCAATGAACGTGCTTCGCAGATCCGCATAGGTCAGGACacga < 2:98890/150‑1 (MQ=255) gTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTtctc < 2:43276/49‑1 (MQ=255) gTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTtctc > 1:43276/1‑49 (MQ=255) aGCATCGGAAAATTTGACGCCGTCGAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCTCGATGGTGCGCCCTGGTTCACGTCCATCTGGATCAATGAACGTGCTTCGCAGATCCGCATAGGTCAGGACACGACGTCAAtc < 2:380844/150‑2 (MQ=255) gCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCTCGATGGTGCGCCCTGGTTCACGTCCATCTGGATCAATGAACGTGCTTCGCAGATCCGCATAGGTCAGGACACGACGTCCAttg > 2:1227735/1‑150 (MQ=255) cATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCTCGATGGTGCGCCCTGGTTCAc < 1:892724/87‑1 (MQ=255) cATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCTCGATGGTGCGCCCTGGTTCAc > 2:892724/1‑87 (MQ=255) gAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCTCGATGGTGCGCCCTGGTTCACGTCCATCTGGATCAATGAACGTGCTTCGCAGATCCGCATAGGTCAGGACACGACGTCCATTGTTgcgc > 2:61783/1‑150 (MQ=255) gtcaTTTGACGGCGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCTCGATGGTGCGCCCTGGTTCACGTCCATCTGGATCAATGAACGTGCtt < 2:626204/104‑1 (MQ=255) gtcaTTTGACGGCGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCTCGATGGTGCGCCCTGGTTCACGTCCATCTGGATCAATGAACGTGCtt > 1:626204/4‑107 (MQ=255) tcaTTTGACGGCGTCAAATGACCAGTCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCTCGATGGTGCGCCCTGGTTCACGTCCATCTGGATCAATGAACGTGCTTCGCAGATCCGCATAGGTCAGGACACGACGTCCATTGTTGCGCaa > 2:732452/3‑150 (MQ=255) aTTTGACGCCGCCAAATGACCAGGCGAACTTCTCCAGATGGCCT‑GTGAGATGCAGCTCGATGGTGCGCCCTGGTTCACGTCCATCTGGATCAATGAACGTGCTTCGCAGATCCGCATAGGTCAGGACACGACGTCCATTGTTGCGCAAGc < 1:639483/150‑1 (MQ=255) aCGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCTT‑GTGAGATGCAGCTCGATGGTGCGCCCTGGTTCACGTCCATCTGGATCAATGAACGTGCTTCGCAGATCCGCATAGGTCAGGACACGACGTCCATTGTTGCGCAAGCCGAtt < 2:1391523/150‑1 (MQ=255) | ATGAAATTACCGTCCTCATCCTCCAGATCGCTCCACATTCCGTGGAGGTGGATGGGGTGAGTCATCATGGTGTCGTTGACCAAAGTGATTCGCAGACGCTC‑‑GCCATATTTGAGGCGTAGGGGTTCAGCATCGGAAAATTTGACGCCGTCAAATGACCAGGCGAACTTCTCCATATGGCCT‑GTGAGATGCAGCTCGATGGTGCGCCCTGGTTCACGTCCATCTGGATCAATGAACGTGCTTCGCAGATCCGCATAGGTCAGGACACGACGTCCATTGTTGCGCAAGCCGATT > NC_002947/6132047‑6132337 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |