| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,138,499 | T→A | 7.5% | F300I (TTC→ATC) ‡ | czcC → | CzcC family metal RND transporter outer membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,138,499 | 0 | T | A | 7.5% | 160.6 / 4.5 | 53 | F300I (TTC→ATC) ‡ | czcC | CzcC family metal RND transporter outer membrane protein |
| Reads supporting (aligned to +/- strand): ref base T (25/24); new base A (2/2); total (27/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.00e-01 | |||||||||||
CCATGACCCGTGAAGCACAAGCCCAGGTGCAGCAGGCCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCGGCACTGCGTGAGCACACCGCGCAACTCGAAGCTGACCTGGCGGAATACCAACGCCTACAACGGGCAGT > NC_002947/6138356‑6138644 | ccATGACCCGTGAAGCACAAGCTCAGGTGCAGCAGGCCATCGCCGAGAAAAAGTCGGATTGGGGCTGTCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCACTGTCCAGGTCAGTTTTCAATTGCCGCTGTGCAGCg < 2:125101/150‑1 (MQ=255)ccATGACCCGTGAAGCACAAGCCCAGGTGCAGCAGGCCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCg < 2:454265/150‑1 (MQ=255) ccGTGAAGCACAAGCCCAGGTGCAGCAGGCCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTcgcg > 2:1198962/1‑150 (MQ=255) ccGTGAAGCACAAGCCCAGGTGCAGCAGGCCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTcgcg > 1:353653/1‑150 (MQ=255) cGTGAAGCACAAGCCCAGGTGCAGCAGGCCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCgg > 1:775901/1‑150 (MQ=255) cGTGAAGCACAAGCCCAGGTGCAGCAGGCCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCgg < 2:353653/150‑1 (MQ=255) aGCACAAGCCCAGGTGCAGCAGGCCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGa < 1:1131415/150‑1 (MQ=255) gCACAAGCCCAGGTGCAGCAGGCCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGAc < 2:775901/150‑1 (MQ=255) gCACAAGCCCAGGTGCAGCAGGCCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGAc < 2:1094874/150‑1 (MQ=255) aaGCCCAGGTGCAGCAGGCCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGAACAGCGGcaa > 2:741811/1‑134 (MQ=255) aaGCCCAGGTGCAGCAGGCCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGAACAGCGGcaa < 1:741811/136‑3 (MQ=255) gCCCAGGTGCAGCAGGCCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGAACAGCGGcaat < 2:285515/135‑4 (MQ=255) gCCCAGGTGCAGCAGGCCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGAACAGCGGcaat > 1:285515/1‑132 (MQ=255) cccAGGTGCAGCAGGTCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCgg < 2:815474/137‑1 (MQ=255) cccAGGTGCAGCAGGTCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCgg > 1:815474/1‑137 (MQ=255) tCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGccc > 2:869269/1‑150 (MQ=255) cGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCa < 1:627129/150‑1 (MQ=255) gaAAAAGTCGGATTGGGGCTGGCAGGTCGCATACCAAAGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCg > 2:163505/1‑150 (MQ=255) cgTCGGATTCCGGCTGGCAGCTCGACTAACAACCCCGCGTGCCCGAACTCAGCAACATGGCCAGTCTCCAGGCCACCTTCCCATTGCCGCTGTTCAGCGGCTCGCGGCAAGCCCCGATCATCGCTCCTCGCCCGGCCCAGGTGCGTCAGc < 2:339736/149‑1 (MQ=255) tCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGCATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTg > 2:1032801/1‑150 (MQ=255) tCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGAc > 1:1194099/1‑111 (MQ=255) tCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGAc < 2:1194099/111‑1 (MQ=255) gatctGGGGCTGGCAGGTCGACTACACACGCCGCGTGCCCAAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTgga < 2:1248290/146‑1 (MQ=255) gATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGCCCCGAATTCAGCAATATGGTCACTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTggag > 1:219140/1‑150 (MQ=255) gggCTGGCAGGTCGACTACCAACGCCGCGGGCCCAAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTggagagatc > 1:1248290/1‑145 (MQ=255) gCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAAc < 1:869269/150‑1 (MQ=255) gTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCACAAGTCGCCGGGCCCAGGTGCGTCAGCTGGGGGACGAACAGGAAGCg > 1:154772/1‑150 (MQ=255) tCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCgg < 1:1198962/150‑1 (MQ=255) ccAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCGGCACTGCg > 2:119550/1‑150 (MQ=255) cAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCa < 2:948451/80‑1 (MQ=255) cAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCa > 1:948451/1‑80 (MQ=255) gAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCGGCACTGCGTGAGCACACCGCGCaa < 1:1134121/150‑1 (MQ=255) aaCATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTggag < 1:534330/102‑1 (MQ=255) aaCATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTggag > 2:534330/1‑102 (MQ=255) tCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCGGCACTGCGt < 1:575508/119‑1 (MQ=255) tCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCGGCACTGCGt > 2:575508/1‑119 (MQ=255) tCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCGGCACTGCGTGAGCACACCGCGCAACTCGAAGCTGACCTGGCGGAAt < 2:264582/150‑1 (MQ=255) cAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCgg < 1:1364608/103‑1 (MQ=255) cAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCgg > 2:1364608/1‑103 (MQ=255) aGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCgct < 2:117655/56‑1 (MQ=255) aGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCgct > 1:117655/1‑56 (MQ=255) aGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCGGCACTGCGTGAGCACACCGCGCAACTCGAAGCTGACCTGGCGGAATAcc > 1:1125033/1‑150 (MQ=255) gTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACa > 2:68987/1‑92 (MQ=255) gTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACa < 1:68987/92‑1 (MQ=255) ttttCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCgatga < 2:515540/44‑1 (MQ=255) ttttCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCgatga > 1:515540/1‑44 (MQ=255) ttttCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCGGCACTGCGTGAGCACACCGCGCAACTCGAAGCTGACCTGGCGGAATACCAACGCCt > 1:1401340/1‑150 (MQ=255) ccGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCGGCACTGCGTGAGCACACCGCGCAACTCGAAGCTGACCTGGCGGAATACCAACGCCTACAACGGGCa > 1:233735/1‑150 (MQ=255) cGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCGGCACTGCGTGAGCACACCGCGCAACTCGAAGCTGACCTGGc > 1:1048045/1‑124 (MQ=255) cGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCGGCACTGCGTGAGCACACCGCGCAACTCGAAGCTGACCTGGc < 2:1048045/124‑1 (MQ=255) gCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGca < 2:375925/49‑2 (MQ=255) gCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGca > 1:375925/1‑48 (MQ=255) gCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCGGCACTGCGTGAGCACACCGCGCAACTCGCCGCCGACCTGGCGGAATACCAACGCCTACAACGGGCAGt > 2:690776/1‑150 (MQ=255) | CCATGACCCGTGAAGCACAAGCCCAGGTGCAGCAGGCCATCGCCGAGAAAAAGTCGGATTGGGGCTGGCAGGTCGACTACCAACGCCGCGGGCCCGAATTCAGCAACATGGTCAGTGTCCAGGTCAGTTTTCAATTGCCGCTGTTCAGCGGCTCGCGGCAAGACCCGATGATCGCTGCTCGCCGGGCCCAGGTGCGTCAGCTGGAGGACGAACAGGAAGCGGCACTGCGTGAGCACACCGCGCAACTCGAAGCTGACCTGGCGGAATACCAACGCCTACAACGGGCAGT > NC_002947/6138356‑6138644 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |