| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 591,706 | C→G | 14.3% | intergenic (+17/+14) | PP_0501 → / ← PP_0502 | NAD‑dependent epimerase/dehydratase family protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 591,706 | 0 | C | G | 14.3% | 111.8 / 11.2 | 42 | intergenic (+17/+14) | PP_0501/PP_0502 | NAD‑dependent epimerase/dehydratase family protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (21/15); new base G (4/2); total (25/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.31e-01 | |||||||||||
TATGCGGCGGCGCGATCGGGTGATATCCGCCATTCGCGAGCAGATAACCAGCGGCTGTTGGCGCGGTTCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTAAGACCCGCCCATCCTGGCCACGGACCTGCAATATTTCAAGCGCCTGCCCCGTCACGCCGTCCACCAGTTCCGAACGCGCTTCTCCCGCCTC > NC_002947/591561‑591854 | tATGCGGCGGCGCGATCGGGTGATATCCGCCATTCGCGAGCAGATAACCAGCGGCTGTTGGCGCGGTTCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTcagca < 1:1320824/150‑1 (MQ=255) gATCGGGTGATATCCGCCATTCGCGAGCAGATAACCAGCGGCTGTTGGCGCGGTTCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCAc < 2:455252/150‑1 (MQ=255) tGATATCCGCCATTCGCGAGCAGATAACCAGCGGCTGTTGGCGCGGTTCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCAc < 2:336694/143‑1 (MQ=255) tGATATCCGCCATTCGCGAGCAGATAACCAGCGGCTGTTGGCGCGGTTCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCAc > 1:336694/1‑143 (MQ=255) tCCGCCATTCGCGAGCAGATAACCAGCGGCTGTTGGCGCGGTTCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCAcc < 2:637694/150‑1 (MQ=255) tCCGCCATTCGCGAGCAGATAACCAGCGGCTGTTGGCGCGGTTCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCAcc > 1:637694/1‑150 (MQ=255) ttCGCGAGCAGATAACCAGCGGCTGTTGGCGCGGTTCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTgc > 2:22357/1‑150 (MQ=255) cgAGCAGATAACCAGCGGCTGTTGGCGCGGTTCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTcag > 2:1410342/1‑112 (MQ=255) cgAGCAGATAACCAGCGGCTGTTGGCGCGGTTCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTcag < 1:1410342/112‑1 (MQ=255) aGATAACCAGCGGCTGTTGGCGCGGTTCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTGAGCAGccccgc < 2:111437/116‑4 (MQ=255) aGATAACCAGCGGCTGTTGGCGCGGTTCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTGAGCAGccccgc > 1:111437/1‑113 (MQ=255) cAGCGGCTGTTGGCGCGGTTCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCaa < 1:910167/142‑1 (MQ=255) cAGCGGCTGTTGGCGCGGTTCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCaa > 2:910167/1‑142 (MQ=255) gCGGCTGTTGGCGCGGTTCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCgg < 1:330719/147‑1 (MQ=255) gCGGCTGTTGGCGCGGTTCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCgg > 2:330719/1‑147 (MQ=255) gCGGCTGTTGGCGCGGTTCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCgg > 2:381316/1‑147 (MQ=255) gCGGCTGTTGGCGCGGTTCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCgg < 1:381316/147‑1 (MQ=255) cTGTTGGCGCGGTTCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTaa < 2:86937/150‑1 (MQ=255) ttGGCGCGGTTCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTAAGAc > 1:1370802/1‑150 (MQ=255) cgcgGTTCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTAAGACCCGc < 1:22357/150‑1 (MQ=255) gcgGTTCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTAAGACCCGcc > 2:178175/1‑150 (MQ=255) ccgGTTCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAATCTTCTCGGTAAAGGCTGATCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTAAGACCCGcc < 1:1338604/149‑1 (MQ=255) ttCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTAAGACCCGCCCATc > 2:1393627/1‑150 (MQ=255) tttGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTAAGACCCGCCCATCCTg > 1:665777/1‑147 (MQ=255) tttGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTAAGACCCGCCCATCCTg < 2:665777/147‑1 (MQ=255) gcAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCCGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTAAGACCCGCCCATCCTGGCCACGGa > 1:1366702/1‑150 (MQ=255) aCGCCGCTGGTTGCAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTAAGACCCGCCCATCCTGGCCACGGACCTGCaa > 2:1235003/1‑150 (MQ=255) gCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTAAGACCCGCCCATCCTGGCCACGGACCTGCAata > 2:1154096/1‑150 (MQ=255) ggTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTAAGACCCGCCCATCCTGGCCACGGACCTGCAATATTTCaa > 2:243537/1‑150 (MQ=255) gCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTAAGACCCGCCCATCCTGGCCACGGACCTGCAATATTTCAAGCGCCTGc < 1:178175/150‑1 (MQ=255) cTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTAAGACCCGCCCATCCTGGCCACGGACCTGCAATATTTCAAGCGCCTGccc > 1:518254/1‑150 (MQ=255) aCAAAGCTTCTCGGTAAAGGCTGAGCACCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTAAGACCCGCCCATCCTGGCCACGGACCTGCAATATTTCAAGCGCCTGCCCCGt > 1:269912/1‑150 (MQ=255) aaaGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTg > 1:423305/1‑49 (MQ=255) aaaGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTg < 2:423305/49‑1 (MQ=255) tcGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTAAGACCCGCCCATCCTGGCCACGGACCTGCAATATTTCAAGCGCCTGCCCCGTCACGCCGTcc > 1:340576/1‑150 (MQ=255) ggCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCgg > 1:1329245/1‑74 (MQ=255) ggCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCgg < 2:1329245/74‑1 (MQ=255) ccccGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTAAGACCCGCCCATCCTGGCCACGGACCTGCAATATTTCAAGCGCCTGCCCCGTCACGCCGTCCACCAGTTCCGAAcgc < 1:1235003/150‑1 (MQ=255) gtcagggCTGCTGAGCAGCCCCGACATCACCCCTGCCGCACCCTTCTCCGCTGGCAATCTTCGGGATGTAAGACCCGCCCATCCTGGCCACGGACCTGCAATATTTCAAGCGCCTGCCCCGTCACGCCGTCCACCAGTTCCTAACGCGCt > 1:1418224/5‑150 (MQ=255) tcagggCTGCTGAGCAGCCCCGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTAAGACCCGCCCATCCTGGCCACGGACCTGCAATATTTCaa < 2:231193/105‑1 (MQ=255) tcagggCTGCTGAGCAGCCCCGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTAAGACCCGCCCATCCTGGCCACGGACCTGCAATATTTCaa > 1:231193/4‑108 (MQ=255) gcgGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTAAGACCCGCCCATCCTGGCCACGGACCTGCAATATTTCAAGCGCCTGCCCCGTCACGCCGTCCACCAGTTCCGAACGCGCtt > 1:972901/1‑150 (MQ=255) gggCTGCTGAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTAAGACCCGCCCATCCTGGCCACGGACCTGCAATATTTCAAGCGCCTGCCCCGTCACGCCGTCCACCAGTTCCGAACGCGCTtctc > 2:1054416/1‑150 (MQ=255) gggCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTAAGACCCGCCCATCCTGGCCACGGACCTGCAATATTTCAAGCGCCTGCCCCGTCACGCCGTCCACCAGTTCCGAACGCGCTtctc > 1:1151463/1‑150 (MQ=255) tCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTAAGACCCGCCCATCCTGGCCACGGACCTGCAATATTTCAAGCGCCTGCCCCGTCACGCCGTCCACCAGTTCCGAACGCGCTTCTCCCGCCTc < 2:1151463/150‑1 (MQ=255) | TATGCGGCGGCGCGATCGGGTGATATCCGCCATTCGCGAGCAGATAACCAGCGGCTGTTGGCGCGGTTCGAGTTTGCGCAGGTGACGCCGATGGTTGAAGGCCTGACAAAGCTTCTCGGTAAAGGCTGAGCCCCGCGGGGCTGCTCAGCAGCCCTGACATCACCCATGCCGCACCCTTCTGCGCTGGCAATCTTCGGGATGTAAGACCCGCCCATCCTGGCCACGGACCTGCAATATTTCAAGCGCCTGCCCCGTCACGCCGTCCACCAGTTCCGAACGCGCTTCTCCCGCCTC > NC_002947/591561‑591854 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |