| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 789,081 | G→A | 9.5% | V106M (GTG→ATG) ‡ | gdhA → | NADP‑dependent glutamate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 789,081 | 0 | G | A | 9.5% | 159.8 / 4.9 | 60 | V106M (GTG→ATG) ‡ | gdhA | NADP‑dependent glutamate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base G (23/31); new base A (3/3); total (26/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGAGCGCGCCGTACTTTTCCGCGTTTCTTGGGTCGATGACCAGGGCAAGGTGCAGGTCAACCGCGGCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAGGCGTTCATGAGCGAGCT > NC_002947/788939‑789229 | cGAGCGCGCCGTACTTTTCCGCGTTTCTTGGGTCGATGACCAGGGCAAGGTGCAGGTCAACCGCGGCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGaa < 2:722808/150‑1 (MQ=255)cGAGCGCGCCGTACTTTTCCGCGTTTCTTGGGTCGATGACCAGGGCAAGGTGCAGGTCAACCGCGGCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGaa < 1:1101196/150‑1 (MQ=255) cgcCGTACTTTTCCGCGTTTCTTGGGTCGATGACCAGGGCAAGGTGCAGGTCAACCGCGGCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCt < 2:731420/150‑1 (MQ=255) ttttCCGCGTTTCTTGGGTCGATGACCAGGGCAAGGTGCAGGTCAACCGCGGCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCg > 2:204982/1‑150 (MQ=255) tttCCGCGTTTCTTGGGTCGATGACCAGGGCAAGGTGCAGGTCAACCGCGGCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGa < 2:29226/150‑1 (MQ=255) ccGTGTTTCTTGGGTCGATGACCAGGGCAAGGTGCAGGTCAACCGCGGCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCa < 1:468731/150‑1 (MQ=255) cgTTTCTTGGGTCGATGACCAGGGCAAGGTGCAGGTCAACCGCGGCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGgt < 1:153411/150‑1 (MQ=255) ttGGGTCGATGACCAGGGCAAGGTGCAGGTCAACCGCGGCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCaa < 2:1279478/150‑1 (MQ=255) ggTCGATTACCAGGGCAAGGTGCAGGTCAACCGCGGCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACTTCAGCACGCTGAGGTTcacc < 1:385176/127‑4 (MQ=255) ggTCGATGACCAGGGCAAGGTGCAGGTCAACCGCGGCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACTTCAGCACGCTGAGGTTcacc > 2:385176/1‑124 (MQ=255) gTCGATGACCAGGGCAAGGTGCAGGTCAACCGCGGCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAAc > 1:1039785/1‑150 (MQ=255) gCAGGTCAACCGCGGCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTc > 2:75641/1‑124 (MQ=255) gCAGGTCAACCGCGGCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTc < 1:75641/124‑1 (MQ=255) gCAGGTCAACCGCGGCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCAt < 2:1039785/150‑1 (MQ=255) gTCAACCGCGGCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATgggg > 2:216913/1‑149 (MQ=255) gTCAACCGCGGCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGggc < 1:1335557/150‑1 (MQ=255) ccGCGGCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCCGCCCATGggcagcga < 2:500181/150‑2 (MQ=255) cgcgGCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCCGCCCATGggcagcgag < 1:452333/150‑3 (MQ=255) gcgGCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGggcggcgagg < 1:1060812/150‑4 (MQ=255) ggCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAg < 1:204982/150‑1 (MQ=255) gCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCt > 1:311706/1‑150 (MQ=255) tCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGa > 1:1098542/1‑150 (MQ=255) tGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGCCTTTg > 1:232809/1‑150 (MQ=255) gAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGa < 2:1098542/150‑1 (MQ=255) gCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGAcc < 2:597347/150‑1 (MQ=255) gCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGaaa < 1:272379/150‑1 (MQ=255) cATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAgg > 2:1395811/1‑150 (MQ=255) cATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAgg > 2:62725/1‑150 (MQ=255) ttGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTcc > 1:1384782/1‑63 (MQ=255) ttGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTcc < 2:1384782/63‑1 (MQ=255) ccGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGc > 1:301488/1‑150 (MQ=255) gTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGa < 2:1242543/150‑1 (MQ=255) aaGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGcc > 1:425790/1‑150 (MQ=255) tGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATgc < 1:1395811/150‑1 (MQ=255) gcgcTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAg > 1:78700/1‑143 (MQ=255) gcgcTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAg < 2:78700/143‑1 (MQ=255) gcTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACt < 2:782599/66‑1 (MQ=255) gcTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACt > 1:782599/1‑66 (MQ=255) cTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCtt > 2:641716/1‑150 (MQ=255) ttCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATgc > 2:452975/1‑145 (MQ=255) ttCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATgc < 1:452975/145‑1 (MQ=255) ttCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTc < 2:1002137/150‑1 (MQ=255) ttCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTc > 1:1002137/1‑150 (MQ=255) aCCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGcc > 2:1349305/1‑150 (MQ=255) aCCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGcc > 2:290635/1‑150 (MQ=255) ccGTCGGTGACCCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAg < 2:232809/150‑1 (MQ=255) cGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAgg > 2:1197556/1‑150 (MQ=255) gTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTG‑CCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGaaa > 1:696418/1‑111 (MQ=255) gTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTG‑CCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGaaa < 2:696418/111‑1 (MQ=255) caggAACTTCAGCACGCTGAGGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTc < 2:825893/90‑1 (MQ=38) gTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAGGCGTTc < 1:62725/150‑1 (MQ=255) ggAACTTCAGCACGCTGAGGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAGGc < 2:833141/144‑1 (MQ=255) ggAACTTCAGCACGCTGAGGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAGGc > 1:833141/2‑145 (MQ=255) ggAACTTCAGCACGCTGAGGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAGGCGTTCa > 1:101886/2‑150 (MQ=255) ggAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAGGCGTTCa < 2:301488/149‑1 (MQ=255) aCCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAGGCGTTCATga < 2:425790/150‑1 (MQ=255) aCCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAGGCGTTCATga < 1:216913/150‑1 (MQ=255) ccTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAGGCGTTCATgag > 2:1045770/1‑150 (MQ=255) cTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAGGCGTTCATgagc > 1:998253/1‑150 (MQ=255) cGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAGGCGTTCATGAGCGAGCt < 1:1045770/150‑1 (MQ=255) | CGAGCGCGCCGTACTTTTCCGCGTTTCTTGGGTCGATGACCAGGGCAAGGTGCAGGTCAACCGCGGCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAGGCGTTCATGAGCGAGCT > NC_002947/788939‑789229 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |