Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,011,779 | A→C | 9.4% | Q63P (CAG→CCG) | prfC → | peptide chain release factor 3 |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,011,779 | 0 | A | C | 9.4% | 133.8 / 4.8 | 50 | Q63P (CAG→CCG) | prfC | peptide chain release factor 3 |
Reads supporting (aligned to +/- strand): ref base A (18/27); new base C (2/3); total (20/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CCACCCCGACGCCGGTAAGACCACCATCACCGAGAAGCTGCTGCTGATGGGCAAGGCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGAAGACTTCTCGGAAGACACCTACCGCACCCTGACCGCGGTGGACTCGGCGCTGATGGTGC > NC_002947/1011645‑1011922 | ccACCCCGACGCCGGTAAGACCACCATCACCGAGAAGCTGCTGCTGATGGGCAAGGCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCAt < 1:190156/150‑1 (MQ=255) cACCCCGACGCCGGTAAGACCACCATCACCGAGAAGCTGCTGCTGATGGGCAAGCCCATTGCCGCCGCCGGGACCGTGACGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGATGCCGCGCTGCTTCTCCAtt < 1:678159/150‑2 (MQ=255) cccGACGCCGGTAAGACCACCATCACCGAGAAGCTGCTGCTGATGGGCAAGGCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATcacc > 1:1305935/1‑150 (MQ=255) aCGCCGGTAAGACCACCATCACCGAGAAGCTGCTGCTGATGGGCAAGGCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCt < 2:806583/150‑1 (MQ=255) cGGTAAGACCACCATCACCGAGAAGCTGCTGCTGATGGGCAAGGCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGt < 1:102665/150‑1 (MQ=255) gTAAGACCACCATCACCGAGAAGCTGCTGCTGATGGGCAAGGCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGa < 1:820250/150‑1 (MQ=255) tAAGACCACCATCACCGAGAAGCTGCTGCTGATGGGCAAGGCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGAt < 1:323243/150‑1 (MQ=255) aaGCCCACCATCACCGAGAAGCTGCTGCTGATGGGCAAGGCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATg < 1:109382/150‑1 (MQ=255) caTCACCGAGAAGCTGCTGCTGATGGGCAAGGCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTccc > 1:335658/1‑150 (MQ=255) aCCGAGAAGCTGCTGCTGATGGGCAAGGCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTAc < 1:998531/150‑1 (MQ=255) ccGGGAAGCTGCTGCTGATGGGCATGTACTTTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTAcc < 1:114/150‑1 (MQ=255) cGAGAAGCTGCTGCTGATGGGCAAGGCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCAt < 1:1335499/120‑1 (MQ=255) cGAGAAGCTGCTGCTGATGGGCAAGGCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCAt > 2:1335499/1‑120 (MQ=255) tgctgctgATGGGCAAGGCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGcaca > 1:1295085/1‑150 (MQ=255) gctgctgATGGGCAAGGCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGATGCCGCGCTGCTTCTCCAtt > 2:762494/1‑111 (MQ=255) gctgctgATGGGCAAGGCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGATGCCGCGCTGCTTCTCCAtt < 1:762494/112‑2 (MQ=255) tgctgATGGGCAAGGCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGa < 1:1234126/150‑1 (MQ=255) tgctgATGGGCAAGGCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGa < 2:171480/150‑1 (MQ=255) tgctcATCGGCAAGGCCATTGCCGTCGCCGGTTCCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGa < 2:442256/150‑1 (MQ=255) gcaacggCCA‑TGCCGTCGCCGATACCGGTAATTCGCGCAATTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGc < 2:306218/145‑1 (MQ=255) gCAAGGCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGc > 1:1149771/1‑150 (MQ=255) aaGGCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTc > 2:220183/1‑150 (MQ=255) ggCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTcc > 2:878850/1‑119 (MQ=255) ggCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTcc < 1:878850/119‑1 (MQ=255) ggCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACcgc > 1:1250778/1‑127 (MQ=255) ggCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACcgc < 2:1250778/127‑1 (MQ=255) gCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGac > 1:506985/1‑150 (MQ=255) tGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGACAcccc < 2:1295085/150‑1 (MQ=255) cGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGa > 1:1160072/1‑150 (MQ=255) ggTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGaa < 2:506985/150‑1 (MQ=255) ggTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGaa < 2:1149771/150‑1 (MQ=255) ggTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGaa < 2:1160072/150‑1 (MQ=255) tCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGAAGACTTCTCGGaa < 1:1146156/150‑1 (MQ=255) gcgcAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGAAGACTTCTCGGAAGa < 1:650785/150‑1 (MQ=255) ccGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGAAGACTTCTCGGAAGACACCTAcc < 1:243843/150‑1 (MQ=255) ccacgccacCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGAAGACTTCTCGGAAGACACCTACCGCa > 1:1177857/1‑146 (MQ=255) ccacgccacCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGAAGACTTCTCGGAAGACACCTACCGCa < 2:1177857/146‑1 (MQ=255) cacgccacCTCCGACTGGATGGAAATGAAGAAGCAGCGCGGCATCTCCATCACCACGTAGGTGATGCAGTTCGAGTAACGTAAAGTGGAATTGAACCTGCTCGACACCCCCGGCCACGAAGACTTCTCGGACGCCACCTACCGCACCCTg > 1:678928/1‑150 (MQ=255) tCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGAAGACTTCTCGGAAGACACCTACCGCACCCTGACCGCGGTg < 2:1305935/150‑1 (MQ=255) gatggaAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGAAGACTTCTCGGAAGACACCTACCGCACCCTGACCGCGGTGGa < 1:1146369/144‑1 (MQ=255) gatggaAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGAAGACTTCTCGGAAGACACCTACCGCACCCTGACCGCGGTGGa > 2:1146369/1‑144 (MQ=255) atggaAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGAAGACTTCTCGGAAGACACCTACCGCACCCTGACCGCGGTGGACTCGgcg > 1:64886/1‑150 (MQ=255) tggaAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGAAGACTTCTCGGAAGACACCTACCGCACCCTGACCGCGGTGGACTCGgcgc > 1:752351/1‑150 (MQ=255) ggaAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGAAGACTTCTCGGAAGACACCTACCGCACCCTGACCGCGGTGGACTCGGCGCt > 2:358183/1‑150 (MQ=255) aTGGAGATGCCGCGCTGCTTCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGAAGACTTCTCGGAAGACACCTACCGCACCCTGACCGCGGTGGACTCGGCGCTGATg > 2:823172/1‑150 (MQ=255) tGGAGATGCCGCGCTGCTTCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGAAGACTTCTCGGAAGACACCTACCGCACCCTGACCGCGGTGGACTCGGCGCTGATgg < 1:823172/150‑1 (MQ=255) gagaAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGAAGACTTCTCGGAAGACACCTACCGCACCCTGACCGCGGTGGACTCGGCGCTGATGGTg > 2:466395/1‑150 (MQ=255) agaAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGAAGACTTCTCGGAAGACACCTACCGCACCCTGACCGCGGTGGACTCgg < 2:109700/138‑1 (MQ=255) agaAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGAAGACTTCTCGGAAGACACCTACCGCACCCTGACCGCGGTGGACTCgg > 1:109700/1‑138 (MQ=255) agaAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGAAGACTTCTCGGAAGACACCTACCGCACCCTGACCGCGGTGGACTCGGCGCTGATGGTGc < 2:1353765/150‑1 (MQ=255) | CCACCCCGACGCCGGTAAGACCACCATCACCGAGAAGCTGCTGCTGATGGGCAAGGCCATTGCCGTCGCCGGTACCGTGAAGTCGCGCAAGTCCGACCGCCACGCCACCTCCGACTGGATGGAAATGGAGAAGCAGCGCGGCATCTCCATCACCACCTCGGTGATGCAGTTCCCGTACCGCGAGCACATGATCAACCTGCTCGACACCCCCGGCCACGAAGACTTCTCGGAAGACACCTACCGCACCCTGACCGCGGTGGACTCGGCGCTGATGGTGC > NC_002947/1011645‑1011922 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |