| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 132,463 | G→A | 9.7% | intergenic (+37/‑115) | cc → / → dsbA | cytochrome c4/thiol:disulfide interchange protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 132,463 | 0 | G | A | 9.7% | 134.9 / 5.8 | 52 | intergenic (+37/‑115) | cc/dsbA | cytochrome c4/thiol:disulfide interchange protein |
| Reads supporting (aligned to +/- strand): ref base G (27/19); new base A (2/3); total (29/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.41e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.97e-01 | |||||||||||
GCAACCGCACCAACGATGGCGATGCCATGACCATGCGCACCATCGCTGGCAAGCTGAGCAACCATGACATCGAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCAGGTCGCGTCGTGGCGACCCATGACTGCTCAGGAGTAAAGCATGCGTAAACTGATTCTCAGCGCTGCGCTGGTC > NC_002947/132320‑132610 | gCAACCGCACCAACGATGGCGATGCCATGACCATGCGCACCATCGCTGGCAAGCTGAGCAACCATGACATCGAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCggg < 1:1077215/150‑1 (MQ=255) aaCCGCACCAACGATGGCGATGCCATGACCATGCGCACCATCGCTGGCAAGCTGAGCAACCATGACATCGAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCt > 1:1414161/1‑150 (MQ=255) aCCGCACCAACGATGGCGATGCCATGACCATGCGCACCATCGCTGGCAAGCTGAGCAACCATGACATCGAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTg > 1:141937/1‑150 (MQ=255) aCCAACGATGGCGATGCCATGACCATGCGCACCATCGCTGGCAAGCTGAGCAACCATGACATCGAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTGGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCtt > 1:87669/1‑150 (MQ=255) aCCAACGATGGCGATGCCATGACCATGCGCACCATCGCTGGCAAGCTGAGCAACCATGACATCGAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCtt > 2:960719/1‑150 (MQ=255) ccAACGATGGCGATGCCATGACCATGCGCACCATCGCTGGCAAGCTGAGCAACCATGACATCGAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCAGCCCGGCCGCCCttt < 2:1334370/150‑1 (MQ=255) aaCGATGGCGATGCCATGACCATGCGCACCATCGCTGGCAAGCTGAGCAACCATGACATCGAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGCAGTGCAATGATGAAAGGGCGGCCGGGCTGCCCttttt < 1:114002/150‑1 (MQ=255) aCGATGGCGATGCCATGACCATGCGCACCATCGCTGGCAAGCTGAGCAACCATGACATCGAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCtttttt > 1:683212/1‑150 (MQ=255) aTGACCATGCGCACCATCGCTGGCAAGCTGAGCAACCATGACATCGAAGCGTTGGATAGCTACATCCAGGGCCAGCAGTAACTGTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGt > 1:884349/1‑150 (MQ=255) aCCATGCGCACCATCGCTGGCAAGCTGAGCAACCATGACATCGAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTac < 2:230444/150‑1 (MQ=255) gCAAGCTGAGCAACCATGACATCGAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCt > 1:733050/1‑150 (MQ=255) tGAGCAACCATGACATCGAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCtttttt < 1:64231/108‑1 (MQ=255) tGAGCAACCATGACATCGAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCtttttt > 2:64231/1‑108 (MQ=255) gCAACCATGACATCGAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTtcc > 2:360657/1‑107 (MQ=255) gCAACCATGACATCGAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTtcc < 1:360657/107‑1 (MQ=255) gCAACCATGACATCGAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCt < 1:925419/150‑1 (MQ=255) aaCCATGACATCGAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGt < 1:960719/150‑1 (MQ=255) ccATGACATCGAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGtct > 1:1366751/1‑150 (MQ=255) ccATGACATCGAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGtct > 2:1282470/1‑150 (MQ=255) ccATGACATCGAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGtct < 2:884349/150‑1 (MQ=255) ccATGACATCGAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCAGCCCGgccgcc > 1:661009/1‑94 (MQ=255) ccATGACATCGAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCAGCCCGgccgcc < 2:661009/94‑1 (MQ=255) aTGACATCGAAGCGTTGGCCACCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCATTCCCGCCCTGTCTCa < 2:733050/150‑1 (MQ=255) tCGAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCAg > 1:1402880/1‑150 (MQ=255) gAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTCAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCAGGt > 2:516762/1‑150 (MQ=255) aaGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCAGGTc > 2:279058/1‑150 (MQ=255) aGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCAGCCCGGCCGCCCttt > 1:1088004/1‑76 (MQ=38) aGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCAGCCCGGCCGCCCttt < 2:1088004/76‑1 (MQ=38) tACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCAGGTCGCGTCGTGGCGAcc > 1:1127932/1‑150 (MQ=255) cagccAGGGCCCGGATTAACTTTCGGTTAATGTTGTGGGTCAATGATGCAAGCGCTTCTGGGCGCCCTTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCAGGTCGCGTCGTGGCGACCCa < 2:87669/147‑1 (MQ=255) aTCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCAGGTCGCGTCGTGGCGACCCAt > 1:1094003/1‑150 (MQ=255) tCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGcc > 1:80455/1‑84 (MQ=255) tCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGcc < 2:80455/84‑1 (MQ=255) ccTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGtct < 2:562908/114‑1 (MQ=255) ccTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGtct > 1:562908/1‑114 (MQ=255) gCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCAGGTCGCGTCGTGGCGACCCATGACTGCTCAgg < 1:407573/150‑1 (MQ=255) aTTAACTTTCGGTTAATGTTGTAGGTAAATGATGAAAGGGAGGCAGAGATGACCTTTTTTGCCTCCGCAGCCGGGACACGACAGGACCCGCGCCCTTCCCGTCCGGTCTCAGTGCCGGTCGCGTCGTGGCGCCCCATGACTGCTCAGGAg > 2:161941/1‑150 (MQ=255) aCTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCAGGTCGCGTCGTGGCGACCCATGACTGCTCAGGAGTaaa < 1:1282470/150‑1 (MQ=255) cTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCAGGTCGCGTCGTGGCGACCCATGACTGCTCAGGAGTAAAg < 2:1414161/150‑1 (MQ=255) tttCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCAGGTCGCGTCGTGGCGACCCATGACTGCTCAGGAGTAAAGc > 2:118497/1‑150 (MQ=255) tCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCAGGTCGCGTCGTGGCGACCCATGACTGCTCAGGAGTAAAGCAt < 2:683212/150‑1 (MQ=255) cGGTCAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCAGGTCGCGTCGTGGCGACCCATGACTGCTCAGGAGTAAAGCATg < 1:516762/150‑1 (MQ=255) gTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCAGGTCGCGTCGTGGCGACCCATGACTGCTCa < 2:264504/135‑1 (MQ=255) gTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCAGGTCGCGTCGTGGCGACCCATGACTGCTCa > 1:264504/1‑135 (MQ=255) gTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCAGGTCGCGTCGTGGCGACCCATGACTGCTCAGGAGTAAAGCATGCg > 1:4940/1‑150 (MQ=255) tAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCAGGTCGCGTCGTGGCGAACCATGACTGCTCAGGAGTAAAGCATGCGTACACTGAtc < 2:1090009/150‑2 (MQ=255) aGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCAGGTCGCGTCGTGGCGACCCATGACTGCTCAGGAGTAAAGCATGCGTAAACTGATtc > 2:1034533/1‑150 (MQ=255) gTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCAGGTCGCGTCGTGGCGACCCATGACTGCTCAGGAGTAAAGCATGCGTAAACTGATtctc > 2:505988/1‑150 (MQ=255) atgatgAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCAGGTCGCGTCGTGGCGACCCATGa > 2:63364/1‑111 (MQ=255) atgatgAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCAGGTCGCGTCGTGGCGACCCATGa < 1:63364/111‑1 (MQ=255) gatgaAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCGCTTCCCGGCCTGTCTCAGTGCAAGTCGCGTCGTGGCGACCCATGACTGCTCAGGAGTAAAGCATGCGTAAACTGATTCTCAgcgct > 2:460430/1‑150 (MQ=255) atgaAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCGGGTCGCGTCGTGGCGACCCATGACTGCTCAGGAGTAAAGCATGCGTAAACTGATTCTCAgcgctg > 1:866436/1‑150 (MQ=255) gcggcCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCAGGTCGCGTCGTGGCGACCCATGACTGCTCAGGAGTAAAGCATGCGTAAACTGATTCTCAGCGCTGCGCTggcc < 2:141937/150‑3 (MQ=255) gcggcCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCAGGTCGCGTCGTGGCGACCCATGACTGCTCAGGAGTAAAGCATGCGTAAACTGATTCTCAGCGCTGCGCTGGTc < 2:1127932/150‑1 (MQ=255) | GCAACCGCACCAACGATGGCGATGCCATGACCATGCGCACCATCGCTGGCAAGCTGAGCAACCATGACATCGAAGCGTTGGCCAGCTACATCCAGGGCCTGCATTAACTTTCGGTTAATGTTGTAGGTCAATGATGAAAGGGCGGCCGGGCTGCCCTTTTTTCCGTCCGCAGCCGTTACACTACAGAACTCGAGCCCTTCCCGGCCTGTCTCAGTGCAGGTCGCGTCGTGGCGACCCATGACTGCTCAGGAGTAAAGCATGCGTAAACTGATTCTCAGCGCTGCGCTGGTC > NC_002947/132320‑132610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |