Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,404,894 | A→T | 8.5% | L265Q (CTG→CAG) | PP_1228 ← | methyl‑accepting chemotaxis transducer |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,404,894 | 0 | A | T | 8.5% | 139.2 / 3.4 | 47 | L265Q (CTG→CAG) | PP_1228 | methyl‑accepting chemotaxis transducer |
Reads supporting (aligned to +/- strand): ref base A (27/16); new base T (2/2); total (29/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.31e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 |
GCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAGGTTGGCCAGGCCGATGTCCAGGCCGACCACGCCGACTACCTTGCCGTGTTCCAGCAAGGGCAGAGCGA > NC_002947/1404745‑1405041 | gcaCGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCcagca > 1:766363/1‑150 (MQ=255) caCGCTTTCCGGCAGTTCCAGCACTACCTGCCACGAGGTTGGGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCcagcag < 1:1143066/150‑1 (MQ=255) ttCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCcggc > 2:585836/1‑150 (MQ=255) cGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTTTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCcagcggc > 1:215156/1‑150 (MQ=255) ggCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCcggcggcg > 2:276262/1‑150 (MQ=255) ggCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCCACCGCCGCCGGCCTGCTGGCcggcaaca < 1:1217836/150‑5 (MQ=255) ttCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGc < 2:802948/150‑1 (MQ=255) cAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGAt < 2:1096665/150‑1 (MQ=255) cAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGAt > 1:64081/1‑150 (MQ=255) aGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATg < 1:224512/150‑1 (MQ=255) tACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCAc > 2:367819/1‑150 (MQ=255) cTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCAcctg > 1:225891/1‑150 (MQ=255) cACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCAcctggccc > 1:204898/1‑150 (MQ=255) ggggCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCAcctggccctgg < 2:225891/150‑1 (MQ=255) ggCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACctggccctggcc < 1:1199101/150‑1 (MQ=255) ggCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACctggccccggcc < 2:766363/150‑1 (MQ=255) aGGGATTGGCGTGAAGGGGTGGGCGACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTGACCTGGCCCTGGCCGCCGAACAg > 2:682179/1‑150 (MQ=255) aGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAg > 2:270347/1‑150 (MQ=255) gCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCgcggc > 2:611852/1‑150 (MQ=255) ggggTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGtt > 1:1340692/1‑150 (MQ=255) agcagGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCt > 2:743376/1‑95 (MQ=255) agcagGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCt < 1:743376/95‑1 (MQ=255) gCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAGGtt > 1:419592/1‑150 (MQ=255) ttGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAGGTTGGCCAGGCCGATGTcc > 2:935902/1‑150 (MQ=255) ttGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAGGTTGGCCAGGCCGATGTcc > 1:11754/1‑150 (MQ=255) ttGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAGGTTGGCCAGGCCGATGTcc > 2:936154/1‑150 (MQ=255) gTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGc < 1:1222080/71‑1 (MQ=255) gTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGc > 2:1222080/1‑71 (MQ=255) gTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAGGTTGGCCAGGCCGATGTCCAg > 1:1067934/1‑150 (MQ=255) gTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAGGTTGGCCAGGCCGATGTCCAg > 2:523175/1‑150 (MQ=255) tCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAGGTTGGCCAGGCCGATGTCCAgg < 1:270347/150‑1 (MQ=255) aTGGGCTTGCCGAGCACGCTGTCGTCGTTGCTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAGGTTGGCCAGGCCGATGTCCAGGCCg > 1:1107142/1‑150 (MQ=255) aTGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAAGTTGGCCAGGCCGATGTCCAGGCCg > 1:296046/1‑150 (MQ=255) tGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAGGTTGGCCAGGCCGATGTCCAGGCCGa > 1:199885/1‑150 (MQ=255) ttGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGTGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAGGTTGGCCAGGCCGATGTCCAGGCCGACCACg > 1:718896/1‑150 (MQ=255) gCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCcggcggc > 1:73586/1‑48 (MQ=255) gCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCcggcggc < 2:73586/48‑1 (MQ=255) cGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAGGTTGGCCAGGCCGATGTCCAGGCCGACCACGCCGa > 1:123139/1‑150 (MQ=255) tcgtcgCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCgcgg > 2:133635/1‑78 (MQ=255) tcgtcgCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCgcgg < 1:133635/78‑1 (MQ=255) gACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTAAGTTGCTGCAGGTTGGCCAGGCCGATGTCCAGGCCGACCACGCCGACTACCTTGCCGTGTTCCa < 1:273034/150‑1 (MQ=255) ttGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAGGTTGGCCAGGCCGATGTCCAGGCCGACCACGCCGACTACCTTGCCGTGTTCCAGCAAg < 1:367819/150‑1 (MQ=255) tGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAGGTTGGCCAGGCCGATGTCCAGGCCGACCACGCCGACTACCTTGCCGTGTTCCAGCAAgg > 2:142064/1‑150 (MQ=255) gCCGGCCTGCTGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAGGTTGGCCAGGCCGATGTCCAGGCCGACCACGCCGACTACCTTGCCgt < 2:682353/137‑1 (MQ=255) gCCGGCCTGCTGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAGGTTGGCCAGGCCGATGTCCAGGCCGACCACGCCGACTACCTTGCCgt > 1:682353/1‑137 (MQ=255) gCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAGGTTGGCCAGGCCGATGTCCAGGCCGACCACGCCGACTACCTTGCCGTGTTCCAGCAAggg < 1:276262/150‑1 (MQ=255) cGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAGGTTGGCCAGGCCGATGTCCAGGCCGACCACGCCGACTACCTTGCCGTGTTCCAGCAAGGGCa < 2:123139/150‑1 (MQ=255) gCCTGCTGGGCGGCGGCGGCGGCGATGCTCACCTACCCCTGGCCGTCGAACAGATTGCGGCGGCCGTTAACGCTTAGTTGCTGCCGTTTGGCCAGGCCGATTTCCAGGTCGAATACGCCGACTACCTTGCCGTGTTCCAGCAAGGGCtga > 2:382948/1‑150 (MQ=255) gCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAGGTTGGCCAGGCCGATGTCCAGGCCGACCACGCCGACTACCTTGCCGTGTTCCAGCAAGGGCaga < 2:296046/150‑1 (MQ=255) cagcagGCCGGCGGCGGTGGCGATGCAAGACTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAGGTTGGCCAGGCCGATGTCCAGGCCGACCACGCCGACTACCTTGCCGTGTTCCAGCAAGGGCAGAGc > 1:1107186/1‑150 (MQ=255) gcagGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAGGTTGGCCAGGCCGATGTCCAGGCCGACCACGCCGACTACCTTGCCGTGTTCCAGCAAGGGCAGAGCGa < 2:419592/150‑1 (MQ=255) | GCACGCTTTCCGGCAGTTCCAGCACTACCTGCCACGGGGCTGTGTCAGGGATTGGCGTGAAGGGGTGGGCCACGCGCAGCAGGCCGTCGGCTACCGACTTGTCCATGGGCTTGCCGAGCACGCTGTCGTCGCGACTGTTGCCGGCCAGCAGGCCGGCGGCGGTGGCGATGCTCACCTGGCCCTGGCCGTCGAACAGATCGCGGCGGCCGTTCACGCTCAGTTGCTGCAGGTTGGCCAGGCCGATGTCCAGGCCGACCACGCCGACTACCTTGCCGTGTTCCAGCAAGGGCAGAGCGA > NC_002947/1404745‑1405041 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |