| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,449,146 | T→C | 12.4% | *287R (TGA→CGA) | PP_1266 → | fusaric acid resistance protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,449,146 | 0 | T | C | 12.4% | 92.3 / 4.1 | 39 | *287R (TGA→CGA) | PP_1266 | fusaric acid resistance protein |
| Reads supporting (aligned to +/- strand): ref base T (13/21); new base C (2/3); total (15/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.48e-01 | |||||||||||
AGCTGATCGCCGACGTGAACCCGACCTTCAACTGGGTGCGGCTGGCACAGCGGGTGCCGGTGCGCATTCACATCGATGAAGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTAGCCAGTCGGCTCAATCTGCGGCAGCCTCTTGCAGCAACTGGTCCCAATCGTCCGGTGGGTTGCCGCTATGCAACATCTTT > NC_002947/1449000‑1449290 | aGCTGATCGCCGACGTGAACCCGACCTTCAACTGGGTGCGGCTGGCACAGCGGGTGCCGGTGCGCATTCACATCGATGAAGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGTTGAc < 1:426177/150‑1 (MQ=255) tGATCGCCGACGTGAACCCGACCTTCAACTGGGTGCGGCTGGCACAGCGGGTGCCGGTGCGCATTCACATCGATGAAGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGTTGACCtt > 1:500103/1‑150 (MQ=255) gCCGACGTGAACCCGACCTTCAACTGGGTGCGGCTGGCACAGCGGGTGCCGGTGCGCATTCACATCGATGAAGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGTCAACCTTcgcca < 2:463649/150‑3 (MQ=255) gCCGACGTGAACCCGACCTTCAACTGGGTGCGGCTGGCACAGCGGGTGCCGGTGCGCATTCACATCGATGAAGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGTCAACCTTcgcca < 2:217634/150‑3 (MQ=255) ccGACGTGAACCCGACCTTCAACTGGGTGCGGCTGGCACAGCGGGTGCCGGTGCGCATTCACATCGATGAAGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGTTGACCTTCGCGAc < 1:644173/150‑1 (MQ=255) ccGACCTTCAACTGGGTGCGGCTGGCACAGCGGGTGCCGGTGCGCATTCACATCGATGAAGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGtt < 2:933379/127‑1 (MQ=255) ccGACCTTCAACTGGGTGCGGCTGGCACAGCGGGTGCCGGTGCGCATTCACATCGATGAAGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGtt > 1:933379/1‑127 (MQ=255) gACCTTCAACTGGGTGCGGCTGGCACAGCGGGTGTCGGTGCGCATTCACATCGATGAAGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTCGCGAAGGTTGACCTTCGCGACCATCCCGGCCTcc < 2:4658/150‑1 (MQ=255) ttCAACTGGGTGCGGCTGGCACAGCGGGTGCCGGTGCGCATTCACATCGATGAAGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGTCAACCTTcgcca < 1:1184609/132‑3 (MQ=255) ttCAACTGGGTGCGGCTGGCACAGCGGGTGCCGGTGCGCATTCACATCGATGAAGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGTCAACCTTcgcca > 2:1184609/1‑130 (MQ=255) tCAACTGGGTGCGGCTGGCACAGCGGGTGCCGGTGCGCATTCACATCGATGAAGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGTTGACCTTCGCGACCATCCCGGCCTCCCGcat < 1:484697/150‑1 (MQ=255) aCTGGGTGCGGCTGGCACAGCGGGTGCCGGTGCGCATTCACATCGATGAAGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGTTGACCTTCGCGACCATCCCGGCCTCCCGcatcat < 2:500103/150‑1 (MQ=255) tGCGGCTGGCACAGCGGGTGCCGGTGCGCATTCACATCGATGAAGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGATGACGTGTACGGTGGTAGTAAAGCCTGGCGAAGGTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATATGTgg < 2:432118/150‑1 (MQ=255) ggCTGGCACAGCGGGTGCCGGTGCGCATTCACATCGATGAAGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAg > 1:712833/1‑150 (MQ=255) cTGGCACAGCGGGGGCCAGTGCGCATTCACATCGATGAAGTGCCGGCACGGTCTTTGCCCGCCCTAACCGTTACGTGAACGGTGGTAGGCAAGACTGGCGCAGGTTGACCTTCGCGACCAGCCCGGCCTCCCGCATCATCTGTGGGAGcc < 1:678989/150‑1 (MQ=255) gTGCCGGTGCGCATTCACATCGATGAAGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGatgcat > 1:729788/1‑150 (MQ=255) gTGCGCATTCACATCGATGAAGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCGAGCCTGGCGAAGGTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTAt > 1:1323031/1‑150 (MQ=255) gcgcATTCACATCGATGAAGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTa < 2:908504/150‑1 (MQ=255) ccATTCACATCGATGAAGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTAGc < 1:241783/149‑1 (MQ=255) cATTCACATCGATGAAGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTAGcc > 2:1075274/1‑150 (MQ=255) aTTCACATCGATGAAGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTAGCCa < 1:611436/150‑1 (MQ=255) cacaTCGATGAAGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTAGCCAGTc < 1:778460/150‑1 (MQ=255) gATGAAGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGTTGACATTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTAGCCAGTCGGCTCa > 1:358963/1‑150 (MQ=255) aaGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGTTGACATTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTAGCCAGTCGGCTCAATCt < 2:358963/150‑1 (MQ=255) gAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTAGCCAGTCGGCTCAATCTGCGGCAGc < 1:1075274/150‑1 (MQ=255) gAAGGGGTTTTGCTGGCGGCGGGGACGACGGGTACGTTGGTAGTCAAGCCTGGCGAAGGTCGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTAGCCAGTCGGCTCAATCTGCGGCAGc > 1:743870/1‑150 (MQ=255) tGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGTTGACCTTCGCGACCATCCCGGCATCGCGCATCATCTGTCGGACCCCGGCTGATGCATGCGTATTAGCCAGTCGGCTCAATCTGCGGCAGCCTCTTgcagc < 1:885099/150‑1 (MQ=255) ggACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTAGCCa < 2:663228/107‑1 (MQ=255) ggACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTAGCCa > 1:663228/1‑107 (MQ=255) acgacgTGTACGGTCGTAGTCAAGCCTGGCGAAGGTTGTCCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTAGCCAGTCGGCTCAATCTGCGGCAGCCTCTTGCAGCAACTGGTCCCAATc < 2:743870/150‑1 (MQ=255) tACGGTGGTAGTCAAGCCTGGCGAAGGTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTCCCCAGTCGGCTCAATCTGCGGCAGCCTCTTGCAGCAACTGGTCCCAATCGTCCGGTg > 1:15070/1‑150 (MQ=255) aGTCAAGCCTGGCGAAGGTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTAGCCAGTCGGCTCAATCTGCGGCAGCCTCTTGCAGCAACTGGTCCCAATCGTCCGGTGGGTTGCCGc < 2:729788/150‑1 (MQ=255) tCAAGCCTGGCGAAGGTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTAGCCAGTCGGCTCAATCTGCGGCAGCCTCTTGCAGCAACTg < 2:178846/122‑1 (MQ=255) tCAAGCCTGGCGAAGGTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTAGCCAGTCGGCTCAATCTGCGGCAGCCTCTTGCAGCAACTg > 1:178846/1‑122 (MQ=255) aaGCCTGGCGAAGGTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTAGCCAGTCGGCTCAATCTGCGGCAGCCTCTTGCAGCAACTGGTCCCAATCGTCCGGTGGGTTGCCGCTATg > 1:179226/1‑150 (MQ=255) gCCTGGCGAAGGTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTAGCCAGTCGGCTCAATCTGCGGCAGCCTCTTg < 1:791452/109‑1 (MQ=255) gCCTGGCGAAGGTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTAGCCAGTCGGCTCAATCTGCGGCAGCCTCTTg > 2:791452/1‑109 (MQ=255) cGAAGGTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTAGCCAGTCGGCTCAATCTGCGGCAGCCTCTTGCAGCAACTGGTCCCAATCGTCCGGTGGGTTGCCGCTATGCAACATCt > 2:1094681/1‑150 (MQ=255) aaGGTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTAGCCAGTCGGCTCAATCTGCGGCAGCCTCTTGCAGCAACTGGTCCCAATCGTCCGGTGGGTTGCCGCTATGCAACATCttt < 1:146331/150‑1 (MQ=255) gTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTAGCCAGTCGGCTCAATCTGCGGCAGCCTCTTgca < 2:1415109/100‑1 (MQ=255) gTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTAGCCAGTCGGCTCAATCTGCGGCAGCCTCTTgca > 1:1415109/1‑100 (MQ=255) | AGCTGATCGCCGACGTGAACCCGACCTTCAACTGGGTGCGGCTGGCACAGCGGGTGCCGGTGCGCATTCACATCGATGAAGTGCCGGAAGGGTTTTTGCTGGCGGCGGGGACGACGTGTACGGTGGTAGTCAAGCCTGGCGAAGGTTGACCTTCGCGACCATCCCGGCCTCCCGCATCATCTGTGGGAGCCCTGCTGATGCATGCGTATTAGCCAGTCGGCTCAATCTGCGGCAGCCTCTTGCAGCAACTGGTCCCAATCGTCCGGTGGGTTGCCGCTATGCAACATCTTT > NC_002947/1449000‑1449290 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |