Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,463,032 | A→T | 8.3% | intergenic (‑101/+41) | algI ← / ← algL | alginate O‑acetylase AlgI/alginate lyase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,463,032 | 0 | A | T | 8.3% | 147.4 / 3.3 | 48 | intergenic (‑101/+41) | algI/algL | alginate O‑acetylase AlgI/alginate lyase |
Reads supporting (aligned to +/- strand): ref base A (24/20); new base T (2/2); total (26/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 |
GAAGATCGGCAAGAACAGGAACAGGAACACGTTGGACGAGAAGACCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGAACGGCTGCATGTCGTGCTTGCGCTCAAGCGTGTCGCCAACG > NC_002947/1462884‑1463181 | gAAGATCGGCAAGAACAGGAACAGGAACACGTTGGACGAGAAGACCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAg < 1:91710/150‑1 (MQ=255) gaacaCGTTGGACGAGAAGACCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGccccc > 2:207123/1‑150 (MQ=255) acacGTTGGACGAGAAGACCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGc > 2:462708/1‑150 (MQ=255) acacGTTGGACGAGAAGACCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGATGGAAGGCAACTTAGATCCCTGGGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGc > 1:674803/1‑150 (MQ=255) cGTTGGACGAGAAGACCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAAt < 1:516309/150‑1 (MQ=255) gTTGGACGAGAAGACCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATg > 2:372873/1‑150 (MQ=255) tGGACGAGAAGACCATCCCGGTTCTCCTAATTTGTTCACAGTATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATggg < 2:973833/150‑1 (MQ=255) ggACGAGAAGACCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATgggg < 1:462708/150‑1 (MQ=255) gaagaCCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCTCCGCAATGGGGGTCAAt > 2:33747/1‑150 (MQ=255) aagaCCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGccccc > 1:1055201/1‑134 (MQ=255) aagaCCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGccccc < 2:1055201/134‑1 (MQ=255) aCCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATgggg > 1:1120729/1‑140 (MQ=255) aCCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATgggg < 2:1120729/140‑1 (MQ=255) aCCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCAt > 2:433573/1‑150 (MQ=255) cATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATgg < 2:1113479/136‑1 (MQ=255) cATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATgg > 1:1113479/1‑136 (MQ=255) ctcCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGctctct < 2:857109/150‑1 (MQ=255) ctcCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGctctct < 2:276311/150‑1 (MQ=255) tAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATggggg > 2:649788/1‑125 (MQ=255) tAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATggggg < 1:649788/125‑1 (MQ=255) tAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCAc > 2:1416028/1‑150 (MQ=255) tttGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCg < 1:372873/150‑1 (MQ=255) ttGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCgg < 1:1111359/150‑1 (MQ=255) tCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCTTGCCCGCTc < 1:913645/90‑1 (MQ=255) tCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCTTGCCCGCTc > 2:913645/1‑90 (MQ=255) acaGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTa > 2:891000/1‑150 (MQ=255) acaGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTa > 1:1145023/1‑150 (MQ=255) ccAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCcgc < 2:1145023/150‑1 (MQ=255) gaGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCcgcg > 2:979420/2‑150 (MQ=255) aGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGt > 2:829172/1‑150 (MQ=255) cccAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCa > 2:753946/1‑150 (MQ=255) cAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTAATCTCTGCACGAGGGCCGTAGGCCCGCGTCACATCTCCGCCCAGc > 2:308523/1‑150 (MQ=255) aacccccccAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGcc < 2:674803/147‑1 (MQ=255) aGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGt < 1:1416028/150‑1 (MQ=255) cAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGaa < 2:976845/150‑1 (MQ=255) aaGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAACCGGAAGCTGTTGAAc > 2:970396/1‑150 (MQ=255) tGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTa < 1:1174003/105‑1 (MQ=255) tGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTa > 2:1174003/1‑105 (MQ=255) gCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGAACGGCTGCATGTc < 1:979420/150‑1 (MQ=255) ttAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGAACGGCTGCATGTCGTGCt > 1:1048272/1‑150 (MQ=255) ttAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCACCCGGAAGCTGTTGAACGGCTGCATGTCGTGCt > 1:243020/1‑150 (MQ=255) aTCCCTGTGGGAGCGGGCCAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGAACGGCTGCATGTCGTGCTTgcg < 1:433573/150‑1 (MQ=255) tgGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGAACGGCTGCATGTCGTGCTTGCGCTCAAGc > 1:491352/1‑150 (MQ=255) gggAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGAACGGCTGCATGTCGTGCTTGCGCTCAAGCg > 1:225697/1‑150 (MQ=255) gAGCGGGCTTGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTc > 2:1169213/1‑77 (MQ=38) gAGCGGGCTTGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTc < 1:1169213/77‑1 (MQ=255) gggCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAACCGGAAGCTGTTGAACGGCTGCAGGTCGTGCTTGCGCTCAAGCGTGTCGc < 1:970396/150‑1 (MQ=255) ggCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCGTTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGAACGGCTGCATGTCGTGCTTGCGCTCAAGCGTGTCGcc > 2:790704/1‑150 (MQ=255) aGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGAACGGCTGCATGTCGTGCTTGCGCTCAAGCGTGTCGCCAACg > 1:157847/1‑150 (MQ=255) | GAAGATCGGCAAGAACAGGAACAGGAACACGTTGGACGAGAAGACCATCCCGGTTCTCCTAATTTGTTCACAGCATCCAGGGCAAAGCGCCCCCCAAACCCCCCAGTGCAAGGCTGGAAGGCAACTTAGATCCCTGTGGGAGCGGGCAAGCCCGCTCCCACAGGTTCCGCCCCCGCAATGGGGGTCAATTCATTTCTTGCTCTCTGCACTCGGGTCGTAGACCCGCGTCACATCGCCGCCCAGCCGGAAGCTGTTGAACGGCTGCATGTCGTGCTTGCGCTCAAGCGTGTCGCCAACG > NC_002947/1462884‑1463181 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |