| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,776,194 | C→T | 6.4% | G76G (GGC→GGT) | PP_1583 → | structural protein P5 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,776,194 | 0 | C | T | 6.4% | 180.2 / 2.5 | 62 | G76G (GGC→GGT) | PP_1583 | structural protein P5 |
| Reads supporting (aligned to +/- strand): ref base C (29/29); new base T (2/2); total (31/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.67e-01 | |||||||||||
AATCCACGCAACGCCTGGCAGGGTCAGCTCGGGCTGGAGGTGGGCGTGGGC‑AAGCCGCGTTTCGCCCGATTCGACCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATGCCTACGCGCAGGCCATTGCCAAGCGCCTAGGCGTCGGCGTGCGTGACTCGATCGACATTTCCACGCCGCA > NC_002947/1776048‑1776340 | aaTCCACGCAACGCCTGGCAGGGTCAGCTCGGGCTGGAGGTGGGCGTGGGC‑AAGCCGCGTTTCGCCCGATTCGACCAAGCCGAGAACGGTATCCGAGCCCTGGGCACGCAGCGATTCAACGACCGGGGCAAGGATGGGATGCCTGGCGtt > 2:825176/1‑150 (MQ=255) aTCCACGCAACGCCTGGCAGGGTCAGCTCGGGCTGGAGGTGGGCGTGGGC‑AAGCCGCGTTTCGCCCGATTCGACCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTg < 1:843437/150‑1 (MQ=255) aTCCACGCAACGACTAGCACGGTCAGCTCGCACTGCACGAGCGCGTGTGC‑AAGGCGCGTTTCGCCCGATTCGACCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTg < 2:1084722/150‑1 (MQ=255) tCCACGCAACGCCTGGCAGGGTCAGCTCGGGCTGGAGGTGGGCGTGGGC‑AAGCCGCGTTTCGCCCGATTCGACCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTgg > 1:1281982/1‑150 (MQ=255) tCCACGCAACGCCTGGCAGGGTCAGCTCGGCCTCGA‑GTGGGCTGGGGCTGATCCGCGTTTCGCCCGATTCGCACAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTgg < 1:1384928/150‑1 (MQ=255) aCGCAACGCCTGGCAGGGTCAGCTCGGGCTGGAGGTGGGCGTGGGC‑AAGCCGCGTTTCGCCCGATTCGACCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCg < 1:631479/150‑1 (MQ=255) gCAACGCCTGGCAGGGTCAGCTCGGGCTGGAGGTGGGCGTGGGC‑AAGCCGCGTTTCGCCCGATTCGACCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGc > 1:593921/1‑150 (MQ=255) cTGGCAGGGTCAGCTCGGGCTGGAGGTGGGCGTGGGC‑AAGCCGCGTTTCGCCCGATTCGACCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCAt > 2:1192751/1‑150 (MQ=255) tGGCAGGGTCAGCTCGGGCTGGAGGTGGGCGTGGGC‑AAGCCGCGTTTCGCCCGATTCGACCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATc > 1:1051144/1‑150 (MQ=255) tCAGCTCGGGCTGGAGGTGGGCGTGGGC‑AAGCCGCGTTTCGCCCGATTCGACCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTcc > 2:807269/1‑150 (MQ=255) gCTCGGGCTGGAGGTGGGCGTGGGC‑AAGCCGCGTTTCGCCCGATTCGACCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCt < 1:599842/150‑1 (MQ=255) gtgggcgtgggc‑AAGCCGCGTTTCGCCCGATTCGACCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAAc > 1:192438/1‑150 (MQ=255) cgtgggc‑ACGCCGCGTTTCGCCCGATTCGACCAAGCCGAGAACGGGATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTg < 2:384437/150‑1 (MQ=255) cgtgggc‑AAGCCGCGTTTCGCCCGATTCGACCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTg < 2:1281982/150‑1 (MQ=255) gtgggc‑AAGCCGCGTTTCGCCCGATTCGACCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTgg < 1:807269/150‑1 (MQ=255) gggc‑AAGCCGCGTTTCGCCCGATTCGACCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGc > 1:529898/1‑110 (MQ=255) gggc‑AAGCCGCGTTTCGCCCGATTCGACCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGc < 2:529898/110‑1 (MQ=255) aaGCCGCGTTTCGCCCGATTCGACCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCg > 1:1237976/1‑150 (MQ=255) cgcgTTTCGCCCGATTCGACCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGa < 2:890808/150‑1 (MQ=255) cgTTTCGCCCGATTCGACCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGt < 2:1051144/150‑1 (MQ=255) ggttCGCCCGATTCGACCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGc > 1:329389/3‑99 (MQ=255) gTTTCGCCCGATTCGACCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGc < 2:329389/99‑1 (MQ=255) cGACCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCaa > 2:911677/1‑150 (MQ=255) gACCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATCCCTTGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTCAATCTATTGCTGGGCACCGGCGAGTGAGACCGACACCAAt < 1:825176/150‑1 (MQ=255) aCCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGa < 1:450530/106‑1 (MQ=255) aCCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGa > 2:450530/1‑106 (MQ=255) aCCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATg > 1:213860/1‑150 (MQ=255) ccAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAg < 2:330263/132‑1 (MQ=255) ccAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAg > 1:330263/1‑132 (MQ=255) aaGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTga > 2:1303347/1‑133 (MQ=255) aaGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTga < 1:1303347/133‑1 (MQ=255) aaGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATGCCt > 1:981137/1‑150 (MQ=255) cGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCt > 1:1095326/1‑113 (MQ=255) cGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCt < 2:1095326/113‑1 (MQ=255) aTCCGAGCCCTGGGCAAGCTGTTGCTCAACTGCCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATGCCTACGCGCAGGCCAtt < 1:301935/150‑1 (MQ=255) tCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGaca < 1:744828/126‑1 (MQ=255) tCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGaca > 2:744828/1‑126 (MQ=255) cccTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATGCCTACGCGCAGGCCATTGCCAAgc < 1:70311/150‑1 (MQ=255) cccTCGCCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGTAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATGCCTACGCGCAGGCCATTGCCAAgc < 2:542721/150‑1 (MQ=255) gggCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATGCCTACGCGCAGGCCATTGCCAAGCGCCt > 1:1366613/1‑150 (MQ=255) gCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATGCCTACGCGCAGGCCATTGCCAAGCGCCTAg < 2:1237976/150‑1 (MQ=255) cAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATGCCTACGCGCAGGCCATTGCCAAGCGCCTAgg < 1:1192751/150‑1 (MQ=255) cTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATGCCTa < 2:1394751/113‑1 (MQ=255) cTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATGCCTa > 1:1394751/1‑113 (MQ=255) tCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATGCCTACGCGCAGGCCATTGCCAAGCGCCTAGGCGTCGgcgtgc > 2:1274278/1‑150 (MQ=255) aCTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATGCCTACGCGCAGGCCATTGCCAAGCGCCTAGGCGTCGGcgtgcgtg > 2:10996/1‑150 (MQ=255) aCCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATGCCTACGCGCAGGCCATTGCCAAGCGCCTAGGCGTCGGCGTGCGTGACt < 2:23609/150‑1 (MQ=255) ccGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATGCCTACGCGCAGGCCATTGCCAAGCGCCTAGGCGTCGGCGTGCGTGACtc > 2:1168472/1‑150 (MQ=255) gtgCAAGGATGGGATGCCTGGCGCTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATGCCTACGCGCAGGCCATTGCCAAGCGCCTAGGCGTCGGCGTGCGTGACtcgat < 2:654812/148‑1 (MQ=255) gggCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATGCCTACGCGCAGGCCATTGCCAAGCGCCTAGGCGTCGGCGTGCGTGACtcgat > 1:537073/1‑150 (MQ=255) gggCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATGCCTACGCGCAGGCCATTGCCAAGCGCCTAGGCGTCGGCGTGCGTGACtcgat < 1:982309/150‑1 (MQ=255) ggCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATGCCTACGCGCAGGCCATTGCCAAGCGCCTAGGCGTCGGCGTGCGTGACtcgatc < 1:545304/150‑1 (MQ=255) aaGGATGGGATGACTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATGCCTACGCGCAGGCCATTGCCAAGCGCCTAGGCGTCGGCGTGCGTGACTCGATCGAc > 2:770206/1‑150 (MQ=255) gggtgggatgCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATGCCTACGCGCAGGCCATTGCCAAGCGCCTAGGCGTCGGCGTGCGTGACTCGATCGACAt > 1:1422848/4‑150 (MQ=255) gatgCCTGGTGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAAt < 2:815391/85‑1 (MQ=255) gatgCCTGGTGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAAt < 2:815581/85‑1 (MQ=255) gatgCCTGGTGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAAt > 1:815391/1‑85 (MQ=255) gatgCCTGGTGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAAt > 1:815581/1‑85 (MQ=255) cTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATGCCTACGCGCAGGCCATTGCCaa < 2:643643/103‑1 (MQ=255) cTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATGCCTACGCGCAGGCCATTGCCaa > 1:643643/1‑103 (MQ=255) cTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATGCCTACGCGCAGGCCATTGCCAAGCGCCTAGGCGTCGGCGTGCGTGACTCGATCGACATTTCCAcgccgc > 1:872089/1‑150 (MQ=255) tGGCGTTGGTCGGCCTGGCATCGACACGCCTCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGAGACCAATGCCTACGCGCAGGCCATTGCCAAGCGCCTAAGCGTCGGCGTGCGTGACTCGATCGACATTTCCACGCCGCa > 2:653101/1‑150 (MQ=255) | AATCCACGCAACGCCTGGCAGGGTCAGCTCGGGCTGGAGGTGGGCGTGGGC‑AAGCCGCGTTTCGCCCGATTCGACCAAGCCGAGAACGGTATCCGAGCCCTGGGCAAGCTGTTGCTCAACTACCGGGGCAAGGATGGGATGCCTGGCGTTGGTCGGCCTGGCATCGACACTCCGCTGGAGTTCATAAACCGCTGGGCACCGGCGAGTGAGAACGACACCAATGCCTACGCGCAGGCCATTGCCAAGCGCCTAGGCGTCGGCGTGCGTGACTCGATCGACATTTCCACGCCGCA > NC_002947/1776048‑1776340 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |