Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,909,167 | C→G | 11.3% | A42A (GCG→GCC) | PP_1709 ← | fumarylacetoacetate hydrolase family protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,909,167 | 0 | C | G | 11.3% | 151.5 / 11.3 | 53 | A42A (GCG→GCC) | PP_1709 | fumarylacetoacetate hydrolase family protein |
Reads supporting (aligned to +/- strand): ref base C (23/24); new base G (4/2); total (27/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.69e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.00e-01 |
GATGTTGGCGCCGCCTTTGGCGATGGCCGCGACCAGCTCGATTTCATGGCAGAACTCGTCGGTCTGCGGCGGGAAGGGCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGATGGCCGGCGGGTTGAACAGGTAAGTCATGGGTGGATCCTCCTTACTGGAG > NC_002947/1909023‑1909314 | gctGTTGGCGCCGCCTTTGGCGATGGCCGCGACCAGCTCGATTTCATGGCAGAACTCGTCGGTCTGCGGCGGGAAGGGCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGgcgccgcgcc > 2:1200653/3‑150 (MQ=255) gATGTTGGCGCCGCCTTTGGCGATGGCCGCGACCAGCTCGATTTCATGGCAGAACTCGTCGGTCTGCGGCGGGAAGGGCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGgcgccgcgcc > 2:455395/1‑150 (MQ=255) ggCGCCGCCTTTGGCGATGGCCGCGACCAGCTCGATTTCATGGCAGAACTCGTCGGTCTGCGGCGGGAAGGGCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTACGGCGCGGCGCCGCAGGa < 1:859182/150‑1 (MQ=255) cgccTTTGGCGATGGCCGCGACCAGCTCGATTTCATGGCAGAACTCGTCGGTCTGCGGCGGGAAGGGCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCg < 1:800982/150‑1 (MQ=255) ccTTTGGCGATGGCCGCGACCAGCTCGATTTCATGGCAGAACTCGTCGGTCTGCGGCGGGAAGGGCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGc > 1:655141/1‑150 (MQ=255) tttGGCGATGGCCGCGACCAGCTCGATTTCATGGCAGAACTCGTCGGTCTGCGGCGGGAAGGGCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTACGGCGCGGCGCCGCAGGa > 1:48792/1‑141 (MQ=255) tttGGCGATGGCCGCGACCAGCTCGATTTCATGGCAGAACTCGTCGGTCTGCGGCGGGAAGGGCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTACGGCGCGGCGCCGCAGGa < 2:48792/141‑1 (MQ=255) gCGATGGCCGCGACCAGCTCGATTTCATGGCAGAACTCGTCGGTCTGCGGCGGGAAGGGCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACggg < 2:57364/150‑1 (MQ=255) tGGCCGCGACCAGCTCGATTTCATGGCAGAACTCGTCGGTCTGCGGCGGGAAGGGCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGt > 1:777892/1‑150 (MQ=255) cgcgACCAGCTCGATTTCATGGCAGAACTCGTCGGTCTGCGGCGGGAAGGGCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCg > 2:499183/1‑150 (MQ=255) cgcgACCAGCTCGATTTCATGGCAGAACTCGTCGGTCTGCGGCGGGAAGGGCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCg < 2:655141/150‑1 (MQ=255) gcgACCAGCTCGATTTCATGGCAGAACTCGTCGGTCTGCGGCGGGAAGGGCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCgg > 1:849552/1‑150 (MQ=255) aGCTCGATTTCATGGCAGAACTCGTCGGTCTGCGGCGGGAAGGGCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAgg < 1:676469/150‑1 (MQ=255) cTCGATTTCATGGCAGAACTCGTCGGTCTGCGGCGGGAAGGGCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCa < 1:1098806/150‑1 (MQ=255) tCGATTTCATGGCAGAACTCGTCGGTCTGCGGCGGGAAGGGCAGTTCGCCCAGTGCCTCGACCCCGTTGCTTGCCGGTTTCATGAAAAACC‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGccg > 2:202294/1‑148 (MQ=255) gCAGAACTCGTCGGTCTGCGGCGGGAAGGGCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGcc > 1:1364193/1‑150 (MQ=255) cTCGTCGGTCTGCGGCGGGAAGGGCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCgg < 2:945922/150‑1 (MQ=255) tcgtcgGTCTGCGGCGGGAAGGGCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAg < 1:872122/128‑1 (MQ=255) tcgtcgGTCTGCGGCGGGAAGGGCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCggg > 1:1038015/1‑150 (MQ=255) tcgtcgGTCTGCGGCGGGAAGGGCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTACGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAg > 2:872122/1‑128 (MQ=255) tcgGTCTGCGGCGGGAAGGGCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAg < 2:494965/150‑1 (MQ=255) cgGTCTGCGGCGGGAAGGGCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGTATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAgc < 1:175642/150‑1 (MQ=255) ggCAGTTCGCCCAGTGCCTCGACCACTTTGCTTGCCGGTTTCATGAAAAACACCAAGC‑CCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACGCCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCgg > 1:886386/1‑150 (MQ=255) gCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGa < 2:777892/150‑1 (MQ=255) gCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGCTTAATGAAACCAA‑CGCGCTCCTGCGGCGCCGCGCCGTAGGATTACGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGa > 1:1096857/1‑150 (MQ=255) gCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAg < 2:29989/150‑1 (MQ=255) ccAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCa < 1:1094457/100‑1 (MQ=255) ccAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCa > 2:1094457/1‑100 (MQ=255) cTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGAt > 2:1271716/1‑150 (MQ=255) cTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGAt > 2:347640/1‑150 (MQ=255) tCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGATg < 2:849552/150‑1 (MQ=255) tCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGATg < 2:1096857/150‑1 (MQ=255) cGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGATGGCcggcg < 1:1164827/150‑1 (MQ=255) ttgcttgcCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGATGGCCGGCggg < 1:1271716/150‑1 (MQ=255) ttgcttgcCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGATGGCCGGCggg > 1:1215953/1‑150 (MQ=255) ttgcCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGGGGCCCATCCGGGATGCCCTCCTGG‑GCAGCTCAGCGGTGCCGCGGATCGGCAGGCTGACGATAGCCGGGGGGGTGa > 1:525498/1‑150 (MQ=255) ttgcCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCg < 2:1018280/123‑1 (MQ=255) ttgcCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCg > 1:1018280/1‑123 (MQ=255) tgcCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGATGGCCGGCGGGTTGaa < 1:1200653/150‑1 (MQ=255) cGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACAcc < 1:167251/82‑1 (MQ=255) cGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACAcc > 2:167251/1‑82 (MQ=255) ttCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGATGGCCGGCGGGTTGAACAGGTaa < 2:188869/150‑1 (MQ=255) tGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGATg < 2:1413540/125‑1 (MQ=255) tGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGATg > 1:1413540/1‑125 (MQ=255) tGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGATGGCCGGCGGGTTGAACAGGTAAGtga > 1:1172274/1‑148 (MQ=255) tGAAAAACA‑CAGGCTCCTGCGGCGCCACGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGATGGCCGGCGGGTTGAACAGGTAAGTCa > 1:831764/1‑150 (MQ=255) aaaaaCA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGATGGCCGGCGGGTTGAACAGGTAAGTCATg > 2:232724/1‑150 (MQ=255) aca‑cAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGATGGCCGGCGGGTTGAACAGGTAAGTCATGGGTg < 1:499183/150‑1 (MQ=255) gccggaatCCTACGGCGCGGCGCCGCAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGATGGCCGGCGGGTTGAACAGGTAAGTCATGGGTgg > 2:1184896/8‑150 (MQ=255) gCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGATGGCCGGCGGGTTGAACAGGTAAGTCATGGGTGGAtcct > 1:297358/1‑150 (MQ=255) aatCCTACGGCGCGGCGCCGCAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGATGGCCGGCGGGTTGAACAGGTAAGTCATGGGTGGAtcct > 1:1293549/3‑150 (MQ=255) ccTGCGGCGCCGCGCCGTAGGATTCCGGCACCGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGATGGCCGGCGGGTTGAACAGGTAAGTCATGGGTGGATcctcct < 2:337599/150‑1 (MQ=255) ccTACGGCGCGGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGATGGCCGGCGGGTTGAACAGGTAAGTCATGGGTGGATcctcct > 1:360228/1‑150 (MQ=255) tGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGATGGCCGGCGGGTTGAACa > 2:278747/1‑124 (MQ=255) tGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGATGGCCGGCGGGTTGAACa < 1:278747/124‑1 (MQ=255) gccgcgccgTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGATGGCCGGCGGGTTGAACAGGTAAGTCATGGGTGGATCCTCCTTACTGGAg < 2:297358/150‑1 (MQ=255) gccgcgccgTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCCCTGCCGCGGATCGGCAGGCTGACGATGGCCGGCGGGTTGAACAGGTAAGTCATGGGTGGATCCTCCTTACTGGAg < 1:455395/150‑1 (MQ=255) | GATGTTGGCGCCGCCTTTGGCGATGGCCGCGACCAGCTCGATTTCATGGCAGAACTCGTCGGTCTGCGGCGGGAAGGGCAGTTCGCCCAGTGCCTCGACCACGTTGCTTGCCGGTTTCATGAAAAACA‑CAGGCTCCTGCGGCGCCGCGCCGTAGGATTCCGGCCACGGGTAGTTGCGGCCGAGGCAGA‑ACACCCGGCCGACCGGGAAGCGCGCATCGCTGCCGCGGATCGGCAGGCTGACGATGGCCGGCGGGTTGAACAGGTAAGTCATGGGTGGATCCTCCTTACTGGAG > NC_002947/1909023‑1909314 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |