| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,590 | T→C | 20.8% | D1032D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,590 | 0 | T | C | 20.8% | 156.1 / 37.3 | 87 | D1032D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (34/34); new base C (8/10); total (43/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.93e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.85e-01 | |||||||||||
CCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACT > NC_002947/197442‑197737 | cccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGAtt > 1:199751/1‑150 (MQ=39) ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGTA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGAttt < 2:1252910/150‑1 (MQ=255) cTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTc < 1:880405/150‑1 (MQ=39) tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTcc > 2:1353775/1‑150 (MQ=39) gACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCa < 1:463783/150‑1 (MQ=39) gCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGAcc < 1:677178/150‑1 (MQ=38) tCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAt < 2:477249/150‑1 (MQ=39) gTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc > 2:457917/1‑150 (MQ=39) gTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc < 2:299798/150‑1 (MQ=38) gTCACCGAAGGCGGCGTGATCACCTACACCGAGATAATGAGAATATGC‑GCAAAATCGCCTGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTCAAGCCGGC‑AAGACACAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc < 2:666463/150‑1 (MQ=11) cGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCa > 1:1295887/1‑129 (MQ=40) cGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCa < 2:1295887/129‑1 (MQ=40) gcggcgTGATCACCTACACCGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTac < 2:1252055/146‑1 (MQ=39) gcggcgTGATCACCTACACCGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTac > 1:1252055/1‑146 (MQ=39) ggcgTGATCACCTACACCGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAt < 2:623152/135‑1 (MQ=40) ggcgTGATCACCTACACCGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAt > 1:623152/1‑135 (MQ=39) ggcgTGATCACCTACACCGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACaacaac < 2:898791/150‑1 (MQ=38) gTGATCACCTACACCGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGt < 2:970477/150‑1 (MQ=38) gATCACCTACACCGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 1:871360/150‑1 (MQ=38) tCACCTACACCGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa > 1:41744/1‑150 (MQ=38) acacCGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCa > 2:705435/1‑150 (MQ=40) cGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGaa < 1:558185/117‑1 (MQ=255) cGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGaa > 2:558185/1‑117 (MQ=40) cGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGt > 1:797845/1‑150 (MQ=255) cGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGt > 1:633885/1‑150 (MQ=25) gTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTc > 2:950638/1‑150 (MQ=255) tGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCg > 1:1061629/1‑150 (MQ=39) tGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCg > 1:34431/1‑150 (MQ=18) gAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCga > 1:600921/1‑150 (MQ=17) aGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCgag > 2:332697/1‑150 (MQ=39) tCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGc > 1:1159107/1‑150 (MQ=39) cTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCca < 2:34431/150‑1 (MQ=17) cTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATCTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCca < 1:415214/150‑1 (MQ=18) cccAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCcaca < 1:1253060/149‑1 (MQ=17) cccAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCcaca > 2:1253060/1‑149 (MQ=17) cAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGc < 1:950638/150‑1 (MQ=39) aGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTAACCATCGAGAACGCCACAGGCg < 1:994841/150‑1 (MQ=11) aGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCg < 1:1178947/150‑1 (MQ=17) gACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCgg < 2:633885/150‑1 (MQ=17) cGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAtt > 2:1206792/1‑150 (MQ=11) cGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt > 1:722131/1‑113 (MQ=39) cGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt < 2:722131/113‑1 (MQ=39) gtcaCCGTGACACTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTATACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 2:352230/147‑1 (MQ=255) tAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCg > 2:8898/1‑150 (MQ=11) tAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGACAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCg > 1:819924/1‑150 (MQ=11) tAACCGTGACCCTGTCCAACGGACAAACCATTACCGTTGGAGCCGGC‑AAGACCCAGGGCAGCGTCGCTTTTCAGACCCCGGCGAATGACGTCTACAACAACGTTTCGACTGTAAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCg > 1:352230/1‑150 (MQ=11) aaCCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 1:332697/150‑1 (MQ=35) aaCCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 1:1411385/150‑1 (MQ=35) aaCCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 1:705435/150‑1 (MQ=35) aCCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg < 1:1206792/150‑1 (MQ=255) ccGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGc < 2:1024655/150‑1 (MQ=255) gTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTGACCATCGAGAACGCCACAGGCGGTAATTTCGAGCaa > 1:1142836/1‑150 (MQ=255) gTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCaa < 1:522892/150‑1 (MQ=255) gTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGAAAAC‑CAAACACAATGCATCGTCGACTTCCAGATCCGGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTTGAGCaa > 1:603698/1‑150 (MQ=11) gTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCaa < 2:41744/150‑1 (MQ=32) cccTGTCCAACGGCCAAACCATCACCGTTGAAGCCGGC‑AACACCCAGGGCAGCGTCGATTTCGAGACCACGGCGAATGACGCCTAAAACAACGGTTAAACTGTCAGCGTCACCATCCAAAAAGCCAAAGGCGGTAATTTCGAGCAACtta > 2:447409/1‑148 (MQ=11) ccTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGACGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAc > 2:327716/1‑150 (MQ=255) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGc > 2:693961/1‑130 (MQ=33) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGc < 1:693961/130‑1 (MQ=33) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAc > 2:1232798/1‑150 (MQ=32) tGTCCAACGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAccc < 2:1099825/150‑1 (MQ=255) tGTCCAACGGCCAAACCAGTACCGTAGAACCCGGCGAAGGCCAAGGG‑AGCGTCTAGTTGCATAGCTCGCCGAATGACGCGTACCACTACGAATCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTCCGAGCAACTGAccc > 2:1077989/1‑150 (MQ=2) cAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCCTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGaa < 2:1033929/150‑1 (MQ=17) cAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGaa > 1:84818/1‑150 (MQ=32) aaCGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAc < 1:1275982/150‑1 (MQ=33) aCGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAcc < 1:1232798/150‑1 (MQ=34) gggcAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATAGAGAACGCCACAGGCGGTAATTTCGAGCAACCGACCCCGAACCCg > 1:441502/4‑150 (MQ=11) ggCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCg > 2:1154305/1‑150 (MQ=35) aacgaTTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAcccc < 2:1324112/146‑1 (MQ=255) ttACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTc < 2:1159107/150‑1 (MQ=39) ccGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGc > 2:286647/1‑83 (MQ=35) ccGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGc < 1:286647/83‑1 (MQ=35) ccGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCCCCGGCGGTAATTTCGAGCAACTGACCCCGAACCCTACGCCGGCTCAGa < 2:797845/150‑1 (MQ=255) ccGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGa > 1:159025/1‑150 (MQ=38) ccGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAAGCCGTCTCAGa > 1:1129550/1‑150 (MQ=255) ccGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGa < 2:402577/150‑1 (MQ=255) ccGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAACAACTGACCCCGAACCCGACCCCGGCTCAGa < 2:876154/150‑1 (MQ=255) ttGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCa > 2:472975/1‑150 (MQ=255) aaGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGa > 2:1277571/1‑150 (MQ=38) aaGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGa > 1:1283904/1‑150 (MQ=39) gCCGGC‑AAGACCCAGGGCAGCATCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGCCGCCGGCTCAGACCACGATc > 2:350826/1‑150 (MQ=255) ccGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCa > 1:23778/1‑150 (MQ=39) ccGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCa > 2:980097/1‑150 (MQ=255) cGGC‑AAAACCCAGAGACGCGTCGACTTCCAGTCCCAGGCAAATGCAGTCTACAACAACGGCTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCaa < 2:1142836/150‑2 (MQ=11) gC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAcc < 2:258446/123‑1 (MQ=255) gC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAcc > 1:258446/1‑123 (MQ=255) ggCAGCATCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGac < 1:350826/150‑1 (MQ=255) cGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCactac > 1:1216296/1‑150 (MQ=255) gATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCactact < 2:23778/150‑1 (MQ=255) | CCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCA‑ATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACT > NC_002947/197442‑197737 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |