Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,068,194 | A→T | 26.9% | intergenic (‑96/+25) | plsC ← / ← PP_1845 | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,068,194 | 0 | A | T | 26.9% | 60.9 / 27.5 | 41 | intergenic (‑96/+25) | plsC/PP_1845 | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein |
Reads supporting (aligned to +/- strand): ref base A (17/13); new base T (7/4); total (24/17) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 7.36e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.39e-01 |
CCAACGGCAAGAAAATGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTC‑GATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCAGCTCCCGCGCTGCG > NC_002947/2068046‑2068342 | ccAACGGCAAGAAAATGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCAC‑TTTCGCGGGCaa < 2:19361/150‑1 (MQ=255) aaaaTGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGaaaa < 2:906017/150‑1 (MQ=255) aaaTGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTTCGCGGGCTTGCCCGCGaaag < 1:1088610/150‑2 (MQ=255) gCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGt < 2:1117114/150‑1 (MQ=255) cccAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCTTGCCCGCGa < 1:1174557/137‑1 (MQ=255) cccAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCTTGCCCGCGa > 2:1174557/1‑137 (MQ=255) cagGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTa > 2:1241014/1‑150 (MQ=255) ggAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCCTGCGGCTAGc > 1:422108/1‑150 (MQ=255) aaaCAAACGCAATGAATAAAGCATGGTACGACTCACACCAGGCGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGcc < 2:222046/149‑1 (MQ=255) aCATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCaa < 1:597438/150‑1 (MQ=255) cAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGaaaa < 1:964744/123‑1 (MQ=255) cAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGaaaa > 2:964744/1‑123 (MQ=255) gTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTC‑GATc < 1:936363/150‑1 (MQ=255) tACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCTTGCCCGCGaaag < 1:600288/106‑2 (MQ=255) tACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCTTGCCCGCGaaag > 2:600288/1‑105 (MQ=255) tCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATgctgct < 1:1088618/129‑1 (MQ=255) tCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATgctgct > 2:1088618/1‑129 (MQ=255) acacCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTC‑GATCGCCTTGTcc > 2:1023257/1‑150 (MQ=255) acacCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGAAGGGGGACACCGATGTATAGGGCGGTTACGGCCC‑TTTCGGGGTCAAGCCCGCGACAACGGCCCGCGCCGCTAGCCAATATGATGCTGATCCAGCTA‑GATCGCCTTGTcc > 1:388493/1‑150 (MQ=255) cAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTC‑GACCGCCTTGTCCAgcg > 2:382434/1‑150 (MQ=255) gtgCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCACGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTC‑GATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCa < 1:1241014/150‑1 (MQ=255) tgCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTC‑GATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCAc > 2:889519/1‑144 (MQ=255) tgCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTC‑GATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCAc < 1:889519/144‑1 (MQ=255) cACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCCGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTC‑GATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCt > 1:535900/1‑150 (MQ=255) ctggctggGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTC‑GATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTg > 2:219429/1‑150 (MQ=255) ggctggGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTC‑GATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGgt < 1:1023257/150‑1 (MQ=255) tggGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATc > 1:1412519/1‑90 (MQ=255) tggGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATc < 2:1412519/90‑1 (MQ=255) gCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCGAATATCCT‑CTAGCCCGGCGCTGCGCTCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGTTGTTCTtg > 1:1169639/1‑150 (MQ=255) aCCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTC‑GATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTgcg > 1:394619/1‑150 (MQ=255) ttGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTC‑GATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCa > 2:906034/1‑150 (MQ=255) cAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTC‑GATc < 2:567972/83‑1 (MQ=255) cAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTC‑GATc > 1:567972/1‑83 (MQ=255) cTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTC‑GATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGc > 1:193948/1‑150 (MQ=255) ggCCCTTTTCGCGGGCTTGCCCGCG‑AAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTC‑GATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCa < 2:1036422/150‑1 (MQ=255) ggCCCTTTTCGCGGGCTTGCCCGCG‑AAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTC‑GATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCa > 1:1036422/1‑150 (MQ=255) cttttCGCGGGCTTGCCCGCG‑AAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTC‑GATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCAGCTc > 1:1211935/3‑150 (MQ=255) cttttCGCGGGCTTGCCCGCG‑AAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTC‑GATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCAGCTc > 2:361870/3‑150 (MQ=255) cttttCGCGGGCTTGCCCGCG‑AAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGATC‑GATCGCCTTCTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCAGCtt > 1:64789/3‑149 (MQ=255) c‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTC‑GATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCAGCTc > 1:591778/1‑150 (MQ=255) ttttCGCGGGCTTGCCCGCG‑AAAGAGCCTGTGCAGCTTGACCATGTGCTCCGGATTCAGGTC‑GAGCGCCTGGTCCAGCGCCGCCAGCAGCCCTTTGCGCAATTTCAGCTTGGTGTTCTTGTGCGCCAGCGTGTTTAGCTGCTTCAGCTcc > 2:1085683/2‑150 (MQ=255) cAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTC‑GATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCAGCTCCCGCGCTGCg < 2:388493/150‑1 (MQ=255) | CCAACGGCAAGAAAATGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTC‑GATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCAGCTCCCGCGCTGCG > NC_002947/2068046‑2068342 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |