| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,103,203 | C→G | 27.0% | noncoding (35/76 nt) | PP_t24 → | tRNA‑Gly |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,103,203 | 0 | C | G | 27.0% | 55.5 / 26.7 | 37 | noncoding (35/76 nt) | PP_t24 | tRNA‑Gly |
| Reads supporting (aligned to +/- strand): ref base C (12/15); new base G (5/5); total (17/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.91e-01 | |||||||||||
GAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGATCCTCGAAAATAGACGCTTCGGCGTCTTTTTTCGTTTCGGTCAAAGCCATCGGGATCCATGG > NC_002947/2103058‑2103342 | gAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAg > 1:1363730/1‑150 (MQ=255) tCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCg > 2:758100/1‑150 (MQ=255) cGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCACGAGTTCGa < 2:1363730/150‑1 (MQ=255) tCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtc > 2:476164/1‑150 (MQ=255) cAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGc < 1:626485/122‑1 (MQ=255) cAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGc > 2:626485/1‑122 (MQ=255) tAAATACTGTTGCGTCTCTGCGGTGCAGTGGTGGTGATGCACGTAAGGGCGAGGCACGCGGAACGTGGTAAAGCCGCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTc < 2:1270712/150‑1 (MQ=18) aaTACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGGCAAGGTCgt < 1:239862/124‑2 (MQ=255) aaTACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGGCAAGGTCgt > 2:239862/1‑123 (MQ=255) tgtgGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGGCAAGGTCgtg < 1:190647/120‑3 (MQ=255) tgtgGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGGCAAGGTCgtg > 2:190647/1‑118 (MQ=255) tgtgGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGt < 1:350074/135‑1 (MQ=255) tgtgGCGTCTATCCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGt > 2:350074/1‑135 (MQ=255) gCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAt > 2:744262/1‑150 (MQ=255) cGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATc < 2:1110592/150‑1 (MQ=255) gtggtgAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCa > 2:64273/1‑150 (MQ=255) aaGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAgg > 2:794920/1‑150 (MQ=255) aGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGcc > 1:440575/1‑72 (MQ=255) aGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGcc < 2:440575/72‑1 (MQ=255) cTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGATCCTCGa < 1:794920/150‑1 (MQ=255) ttCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGATCCTCGaa > 2:1258574/1‑150 (MQ=255) ccGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGATCCTCGAAAATAGa < 1:307632/150‑1 (MQ=255) gAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGa < 1:1251381/74‑1 (MQ=255) gAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGa > 2:1251381/1‑74 (MQ=255) cTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCGAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCTTTCCACGGCGGTCTGTAGCTCCTCGAAAATAGCCCCTTCGGCGTCttt > 2:62285/1‑150 (MQ=18) tCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCggg < 1:893242/52‑1 (MQ=255) tGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGATCCTCGAAAATAGACGCTTCGGCGTCTTTtttcgttt < 1:1036686/150‑1 (MQ=255) gCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGATCCTCGAAAATAGACGCTTCGGCGTCTTTtttcgtttc < 1:1258574/150‑1 (MQ=255) tAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGACCCTCGAAAATAGACGCTTCGGCGTCTTTTTTCGTTTCGGTCaaa < 1:881534/150‑1 (MQ=255) cccGACCTTGGCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGATCCTCGaaaa > 1:976194/3‑98 (MQ=255) cccGACCTTGGCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGATCCTCGaaaa < 2:976194/96‑1 (MQ=255) cccGACCTTGGCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGATCCTCGAAAATa < 1:994120/98‑1 (MQ=255) cccGACCTTGGCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGATCCTCGAAAATa > 2:994120/3‑100 (MQ=255) cACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGATCCTCGAAAATAGACGCTTCGGCGTCTTTTTTCGTTTCGGTCAAAGCCATCGGGATCCATgg < 2:386349/150‑1 (MQ=255) cACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGATCCTCGAAAATAGACGCTTCGGCGTCTTTTTTCGTTTCGGTCAAAGCCATCGGGATCCATgg < 1:476164/150‑1 (MQ=255) ccGACCTTGGCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGATCCTCGAAAATAGACGCTTCGGCGTCTTTTTTCGTTTCGGTCAAAGCCATCGGGATCCATgg > 1:1050363/2‑149 (MQ=255) ccGACCTTGGCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGATCCTCGAAAATAGACGCTTCGGCGTCTTTTTTCGTTTCGGTCAAAGCCATCGGGATCCATgg < 2:1050363/148‑1 (MQ=255) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGATCCTCGAAAATAGACGCTTCGGCGTCTTTtttcgttt > 2:1350248/1‑124 (MQ=255) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGATCCTCGAAAATAGACGCTTCGGCGTCTTTtttcgttt < 1:1350248/124‑1 (MQ=255) ccTTGCCAAGGCCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGa > 2:107339/1‑73 (MQ=255) ccTTGCCAAGGCCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGa < 1:107339/73‑1 (MQ=255) | GAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGATCCTCGAAAATAGACGCTTCGGCGTCTTTTTTCGTTTCGGTCAAAGCCATCGGGATCCATGG > NC_002947/2103058‑2103342 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |