Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,232,826 | C→T | 7.0% | Q108* (CAG→TAG) | PP_1971 → | hypothetical protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,232,826 | 0 | C | T | 7.0% | 163.6 / 2.6 | 57 | Q108* (CAG→TAG) | PP_1971 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (31/22); new base T (2/2); total (33/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.09e-01 |
AGCCGATGGTGCGGCTGTTCTCTACCATCATTCGCCGCGACGGAGATGACTACTTCCTGATTACCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGGGTGGTGATCGACCCGCTGACGCAGGAGCCATCACCGTATGTGCTGATGCGCAGCAACCTGGAGGCGCTGATACATCGCAAT > NC_002947/2232683‑2232975 | aGCCGATGGTGCGGCTGTTCTCTACCATCATTCGCCGCGACGGAGATGACTACTTCCTGATTACCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAgg < 1:12451/150‑1 (MQ=255) gTGCGGCTGTTCTCTACCATCATTCGCCGCGACGGAGATGACTACTTCCTGATTACCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGtg > 2:205720/1‑144 (MQ=255) gTGCGGCTGTTCTCTACCATCATTCGCCGCGACGGAGATGACTACTTCCTGATTACCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGtg < 1:205720/144‑1 (MQ=255) ggCTGTTCTCTACCATCATTCGCCGCGACGGAGATGACTACTTCCTGATTACCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTa > 2:347829/1‑150 (MQ=255) cTGTTCTCTACCATCATTCGCCGCGACGGAGATGACTACTTCCTGATTACCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTAcc > 1:1356969/1‑150 (MQ=255) tctACCATCATTCGCCGCGACGGAGATGACTACTTCCTGATTACCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGagcagc < 2:1393503/127‑1 (MQ=255) tctACCATCATTCGCCGCGACGGAGATGACTACTTCCTGATTACCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGagcagc > 1:1393503/1‑127 (MQ=255) tctACCATCATTCGCCGCGACGGAGATGACTACTTCCTGATTACCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAAt > 1:182221/1‑150 (MQ=255) aCCATCATTCGCCGCGACGGAGATGACTACTTCCTGATTACCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTc < 2:906955/150‑1 (MQ=255) atcatTCGCCGCGACGGAGATGACTACTTCCTGATTACCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAg > 2:738792/1‑150 (MQ=255) tcatTCGCCGCGACGGAGATGACTACTTCCTGATTACCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAgg > 2:917950/1‑150 (MQ=255) gccgcGACGGAGATGACTACTTCCTGATTACCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGt > 2:1235129/1‑118 (MQ=255) gccgcGACGGAGATGACTACTTCCTGATTACCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGt < 1:1235129/118‑1 (MQ=255) gccgcGAAGGAGATGACTACTTCCTGATTACCCCGGTAGAGAAGGTGGGCATTCGTGTCGACGATGCGCCGTTCGAGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAgg < 2:424260/150‑1 (MQ=255) ggAGATGACTACTTCCTGATTACCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCg > 2:103630/1‑150 (MQ=255) gagaTGACTACTTCCTGATTACCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCgg < 2:1356969/150‑1 (MQ=255) gagaTGACTACTTCCTGATTACCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCgg < 1:989937/150‑1 (MQ=255) gACTACTTCCTGATTACCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCg > 2:42726/1‑150 (MQ=255) ctactTCCTGATTACCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGTAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGa > 2:1192242/1‑150 (MQ=255) ctactTCCTGATTACCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGGGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGa > 2:1023658/1‑150 (MQ=255) tactTCCTGATTACCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGAt > 1:170054/1‑150 (MQ=255) cTGATTACCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGtgc < 1:1147234/97‑1 (MQ=255) cTGATTACCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGtgc > 2:1147234/1‑97 (MQ=255) aCCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCgg < 2:170054/150‑1 (MQ=255) ccccGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGACGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCggg > 1:530088/1‑150 (MQ=255) cccGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGggt < 2:530088/150‑1 (MQ=255) cccGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTCCGggt > 2:611266/1‑150 (MQ=255) ccGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGggtg < 1:347829/150‑1 (MQ=255) cGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGc < 1:230757/129‑1 (MQ=255) cGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGc > 2:230757/1‑129 (MQ=255) cGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGggtgg < 1:42726/150‑1 (MQ=255) agagAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGGGTGGTGAt < 1:887447/150‑1 (MQ=255) tCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGGGTGGTGATCGACCCGc > 2:1115004/1‑150 (MQ=255) tCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGGGTGGTGATCGACCCGc > 1:106790/1‑150 (MQ=255) tCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGGGTGGTGATCGAACCGCTGACGCa < 2:211025/150‑1 (MQ=255) gacgaTGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAgg < 1:345184/91‑1 (MQ=255) gacgaTGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAgg > 2:345184/1‑91 (MQ=255) gacgaTGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGTCCGGATAACCCCCTGCGGGTGGTGATCGACCCGCTGACGCAGGAGCCa > 2:1251920/1‑150 (MQ=255) aTGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGGGTGGTGATCGACCCGCTGACGCAGGAGCCATCAc > 2:454308/1‑150 (MQ=255) tGCGCCGTTCGTGGCCGTGTTGGCATACGAGCTGGGCGAAGGCGCGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGGGTGGTGATCAACCCGCTGACGCAGGAGCCATCAcc < 1:360821/150‑1 (MQ=255) gcCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGGGTGGTGATCGACCCGCTGACGCAGGAGCCATCACCGTa > 2:782740/1‑150 (MQ=255) gcCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGGGTGGTGATCGACCCGCTGACGCAGGAGCCATCACCGTa > 1:1340744/1‑150 (MQ=255) ccGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGTAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGGGTGGTGATCGACCCGCTGACGCAGGAGCCATCACCGTAt < 1:1192242/150‑1 (MQ=255) tCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGGGTGGTGATCGACCCGCTGACGCAGGAGCCATCACCGTATGTGc < 1:103630/150‑1 (MQ=255) gtgtTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTCCTGGTGGTGATCGACCCGCTGACGCAGGAGCCATCACCGTATGTGCTGATgcgc < 1:611266/150‑1 (MQ=255) cTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGGGTGGTGATCGACCCGCTGACGCAGGAGCCATCACCGTATGTGCTGATGCGCAGCAAc > 1:121242/1‑150 (MQ=255) tGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTc > 1:1108563/1‑53 (MQ=255) tGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTc < 2:1108563/53‑1 (MQ=255) tGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGGGTGGTGATCGACCCGCTGACGCAGGAGCCATCACCGTATGTGCTGATGCGCAGCAAcc > 2:1265541/1‑150 (MQ=255) tGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGGGTGGTGATCGACCCGCTGACGCAGGAGCCATCACCGTATGTGCTGATGCGCAGCAAcc > 1:1224668/1‑150 (MQ=255) gTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGGGTGGTGATCGACCCGCTGACGCAGGAGCCATCACCGTATGTGCTGATGCGCAGCAACCTGGAg < 2:182221/150‑1 (MQ=255) gCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGGGTGGTGATCGACCCGCTGACGCAGGAGCCATCACCGTATGTGCTGATGCGCAGCAACCTGGAGgc > 1:477748/1‑150 (MQ=255) gggCGAAGGCGAGTAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGc < 1:662398/80‑1 (MQ=255) gggCGAAGGCGAGTAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGc > 2:662398/1‑80 (MQ=255) ggCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGGGTGGTGATc > 2:1197662/1‑90 (MQ=255) ggCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGGGTGGTGATc < 1:1197662/90‑1 (MQ=255) aGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGGGTGGTGATCGACCCGCTGACGCAGGAGCCATCACCGTATGTGCTGATGCGCAGCAACCTGGAGGCGCTGATACa > 2:1272853/1‑150 (MQ=255) gCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGGGTGGTGATCGACCCGCTGACGCAGGAGCCATCACCGTATGTGCTGATGCGCAGCAACCTGGAGGCGCTGATACATc > 2:842654/1‑150 (MQ=255) gCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGGGTGGTGATCGACCCGCTGACGCAGGAGCCATCACCGTATGTGCTGATGCGCAGCAACCTGGAGGCGCTGATACATc > 1:1304457/1‑150 (MQ=255) cagcagGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGGGTGGTGATCGACCCGCTGACGCAGGAGCCATCACCGTATGTGCTGATGCGCAGCAACCTGGAGGCGCTGATACATCGCAAt < 1:1023658/150‑1 (MQ=255) | AGCCGATGGTGCGGCTGTTCTCTACCATCATTCGCCGCGACGGAGATGACTACTTCCTGATTACCCCGGTAGAGAAGGTCGGCATTCGTGTCGACGATGCGCCGTTCGTGGCCGTGTTGCTGGAAGTGCAGGGCGAAGGCGAGCAGCAGGTGCTGCGTTTTACCAGCAATGTCGAGGACCAGGTCGAGGCGGGGCCGGATAACCCCCTGCGGGTGGTGATCGACCCGCTGACGCAGGAGCCATCACCGTATGTGCTGATGCGCAGCAACCTGGAGGCGCTGATACATCGCAAT > NC_002947/2232683‑2232975 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |