| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,246,285 | A→G | 21.5% | intergenic (+31/+60) | ibpA → / ← PP_1983 | small heat shock protein IbpA/PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,246,285 | 0 | A | G | 21.5% | 87.1 / 19.9 | 47 | intergenic (+31/+60) | ibpA/PP_1983 | small heat shock protein IbpA/PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase |
| Reads supporting (aligned to +/- strand): ref base A (19/17); new base G (5/5); total (24/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.97e-01 | |||||||||||
AAGGCCGCCGGCCTGGCCAATGGCCTGCTCAGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCTGTGCAGATAACCCTGGTACAGATG > NC_002947/2246141‑2246431 | aaGGCCGCCGGCCTGGCCAATGGCCTGCTCAGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTTAACTGATCGAGCTGCAACG‑AAAAAAGGGCACCTCCAGAGGTg > 1:570325/1‑150 (MQ=255) gccgccGGCCTGGCCAATGGCCTGCTCAGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGcc > 2:1227505/1‑150 (MQ=255) cgGCCTGGCCAATGGCCTGCTCAGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCTGGAGGTGCCC‑‑tttt < 2:264757/150‑1 (MQ=255) cgGCCTGGCCAATGGCCTGCTCAGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑tttt > 2:1274954/1‑150 (MQ=255) gCCTGGCCAATGGCCTGCTCAGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTc < 2:526644/150‑1 (MQ=255) gCCTGGCCAATGGCCTGCTCAGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTc < 1:560851/150‑1 (MQ=255) gCCTGGCCAATGGCCTGCTCAGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTc < 1:297362/150‑1 (MQ=255) cTGGCCAATGGCCTGCTCAGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTTAACTGATCGAGCTGCAACG‑AAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTg < 2:570325/150‑1 (MQ=255) cTGGCCAATGGCCTGCTCAGCACCGACCGTGTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCAGTCCGATCAATGGCGAAAAACCAGAGCTGAACTGATCGAGCTGCAACGAACCGAAAGTTACCTCCAGCGGTGCCC‑‑TTTTTCGt < 1:37862/150‑1 (MQ=255) tGGCCAATGGCCTGCTCAGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGTCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACG‑‑AAAAAGGGCACCTCTGGAGGTGCCC‑‑tttttttcgtt < 2:1346242/150‑7 (MQ=38) tGGCCAATGGCCTGCTCAGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACG‑‑AAAAAGGGCACCTCTGGAGGTGCCC‑‑tttttttcgtt > 1:1114771/1‑144 (MQ=38) tGGCCAATGGCCTGCTCAGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACG‑‑AAAAAGGGCACCTCTGGAGGTGCCC‑‑tttttttcgtt < 2:1114771/150‑7 (MQ=38) ccTGCTCAGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCCTGCTTATAACga > 2:944569/1‑149 (MQ=255) tGCTCAGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAg > 1:1312778/1‑150 (MQ=255) aGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCcg > 1:146546/1‑150 (MQ=255) aTCGACCTGCTGCGCATCGTGCCTGAAAAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGt > 1:1076646/1‑150 (MQ=255) tCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCGGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTa > 2:562883/1‑150 (MQ=255) gACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAgg > 1:326092/1‑150 (MQ=255) tgctgcGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTgcg > 2:729052/1‑150 (MQ=255) cgcATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGcc < 1:127920/150‑1 (MQ=255) tGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGCCGTCATGCGATc > 1:20823/1‑150 (MQ=255) gaagaaGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGCCGTCATGCGATCa < 1:986324/150‑1 (MQ=255) gaagaaGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGCCGTCATGCGATCa < 2:281913/150‑1 (MQ=255) gccaaggccaagCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGCCGTCATGCGATCAGTAATc < 2:1312778/150‑1 (MQ=255) aaggccaagCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGCCGTCATGCGATCAGTAATCTGc < 2:20823/150‑1 (MQ=255) ccaagCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCTGGAGGTGCCC‑‑tt < 1:1150357/86‑1 (MQ=255) ccaagCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCTGGAGGTGCCC‑‑tt > 2:1150357/1‑86 (MQ=255) aagCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCGGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGCCGTCATGCGATCAGTAATCTGCCGgcgc < 1:562883/150‑1 (MQ=255) cATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCa < 1:1227505/150‑1 (MQ=255) aTTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAg > 2:615008/1‑150 (MQ=255) cGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAAc < 1:1274954/150‑1 (MQ=255) aTGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCATCGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGCCGTCATTCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGc > 2:675467/1‑150 (MQ=255) aTGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGc < 1:944569/150‑1 (MQ=255) gcTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCcggtaacg < 1:615008/150‑1 (MQ=255) tGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGGAACGGTAATgg > 2:517097/1‑150 (MQ=255) gCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCtg > 1:1304781/1‑150 (MQ=255) tGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCtgtg > 2:1065360/1‑150 (MQ=255) gCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTAAAACGCCGTCCCGTGAAGGTGCGCCACGTTGATGCGAGCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCTGTGc > 1:1242825/1‑150 (MQ=255) gAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCTGTGCAGATa > 1:1083674/1‑150 (MQ=255) aaaaaaaGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCTGTGCAGATaa < 1:729052/150‑1 (MQ=255) aaaaaaGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCTGTGCAGATAAc < 1:261985/150‑1 (MQ=255) aaaaGGGCACCTCCCGAGGTGCCC‑‑TTTTTCTTGCTTCTCACTCAGTCCCGCGTAGGTGCGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCTGTGCAGATAAccc < 2:1083674/150‑1 (MQ=255) aaaGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATAGCCGGCTATGCAGATAACCCt > 2:983063/1‑150 (MQ=255) gggCACCTCTGGAGGTGCCCTTTTTTTCGTGCTTCTCACGCAGTGCCGCGTAGGTGCGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCTGTGCAGATAACCCTg > 1:828592/1‑150 (MQ=255) gggCACCTCTGGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCTGTGCAGATAACCCTGGt > 1:595960/1‑150 (MQ=255) cTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCTGTGCAGATAACCCTGGTACAGAt < 2:326092/150‑1 (MQ=255) tCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCTGTGCAGATAACCCTGGTACAGATg > 2:120371/1‑150 (MQ=255) | AAGGCCGCCGGCCTGGCCAATGGCCTGCTCAGCATCGACCTGCTGCGCATCGTGCCTGAAGAAGCCAAGGCCAAGCGCATTCCGATCAATGGCGAAAAACCAGCGCTGAACTGATCGAGCTGCAACGAAAAAAAGGGCACCTCCAGAGGTGCCC‑‑TTTTTCGTGCTTCTCACGCAGTCCCGCGTAGGTGCGCGGCCGTCATGCGATCAGTAATCTGCCGGCGCCTCCAGCAACATCTGCCGAAACTCCGGTAACGGTAATGGCCGGCTGTGCAGATAACCCTGGTACAGATG > NC_002947/2246141‑2246431 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |