Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 268,744 | T→A | 8.2% | intergenic (‑75/+25) | PP_0216 ← / ← desA | sensory box/GGDEF family protein/delta‑9 fatty acid desaturase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 268,744 | 0 | T | A | 8.2% | 138.6 / 4.6 | 49 | intergenic (‑75/+25) | PP_0216/desA | sensory box/GGDEF family protein/delta‑9 fatty acid desaturase |
Reads supporting (aligned to +/- strand): ref base T (23/22); new base A (2/2); total (25/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.09e-01 |
GGGAAAATCGTTGGAATGTTCTTGGCCATGTGCACGGAGCAGGTCTCAACGTGAAAGCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTCGGGCGCAGCGAGTAAGTCTTGAGTTGTGCTGCGAAGTCGCGCAGTGCCTGGATGCCGCTGGTTTCGGCCTCATGTACCCAGTCTTTCATGGCTGCCAGCATG > NC_002947/268599‑268883 | gggAAAATCGTTGGAATGTTCTTGGCCATGTGCACGGAGCAGGTCTCAACGTGAAAGCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTgggg < 1:67999/150‑1 (MQ=255) tGGAATGTTCTTGGCCATGTGCACGGAGCAGGTCTCAACGTGAAAGCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCCCAGCGGGGCGTGcca < 2:528135/148‑2 (MQ=255) tGGAATGTTCTTGGCCATGTGCACGGAGCAGGTCTCAACGTGAAAGCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCCCAGCGGGGCGTGcca > 1:528135/1‑147 (MQ=255) tGGAATGTTCTTGGCCATGTGCACGGAGCAGGTCTCAACGTGAAAGCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAACGGCACGCCCCCCAGCGGGGCGTGccatt < 2:1043327/150‑4 (MQ=255) ttCTTGGCCATGTGCACGGAGCAGGTCTCAACGTGAAAGCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAAcggc > 1:1415741/1‑150 (MQ=255) tCTTGGCCATGTGCACGGAGCAGGTCTCAACGTGAAAGCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAAcggcg < 2:1041972/150‑1 (MQ=255) gCCATGTGCACGGAGCAGGTCTCAACGTGAAAGCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAg < 1:163895/150‑1 (MQ=255) ccATGTGCACGGAGCAGGTCTCAACGTGAAAGCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAgg < 2:324442/150‑1 (MQ=255) ggCACGGAGCAGGTCTCAACGTGAAAGCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCg < 2:1387839/149‑1 (MQ=255) tatgAGCAGGTCTCAACGTGAAAGCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGCTTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCCCGCACCGCTGGGGGGGGTGCCGATCAACGGCGGTCAGGCGCCGGtg > 1:410219/4‑149 (MQ=255) gTCTCAACGTGAAAGCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAAcggcg < 2:799857/127‑1 (MQ=255) gTCTCAACGTGAAAGCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAAcggcg > 1:799857/1‑127 (MQ=255) tcAACGTGAAAGCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTCGGGCGCCGCGAg > 1:596379/1‑150 (MQ=255) tcAACGCGAAAGCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTCGGGCGCAGCGAg > 2:424856/1‑150 (MQ=255) aaCGTGAAAGCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTggggg > 1:295301/1‑104 (MQ=255) aaCGTGAAAGCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTggggg < 2:295301/104‑1 (MQ=255) aaCGTGAAAGCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTCGGGCGCAGCGAGTa > 1:573692/1‑150 (MQ=255) aCGTGAAAGCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTCGGGCGCAGCGAGTaa < 1:355812/150‑1 (MQ=255) gTGAAAGCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGgcgc > 2:953869/1‑128 (MQ=255) gTGAAAGCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGgcgc < 1:953869/128‑1 (MQ=255) aaGCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTACGGATTAGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCGGGTCGGGCGCAGCGAGTAAGtagtg > 2:480168/1‑146 (MQ=255) aGCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTCGGGCGCAGCGAGTAAGTCTTGa < 1:533155/150‑1 (MQ=255) gCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCGGGTCGGGCGCGGGGAGTAAGTCTTGAg > 1:1252064/1‑150 (MQ=255) gTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGGGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAAGGGCGGTCAGGGGCCGGTCGGGCGCAGCGAGTAAGTCTTGAggt > 1:1176048/1‑148 (MQ=255) tcGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTCGGGCGCAGCGAGTAAGTCTTGAGTtgt < 2:423098/149‑1 (MQ=255) ggCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGc > 2:213850/1‑95 (MQ=255) ggCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGc < 1:213850/95‑1 (MQ=255) gCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTCGGGCGCAGCGAGTAAGTCTTGAGTTGTGCTGCGa > 2:674561/1‑150 (MQ=255) tCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTggg < 2:217104/79‑1 (MQ=255) tCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTggg > 1:217104/1‑79 (MQ=255) gCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTc > 2:1167062/1‑96 (MQ=255) gCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTc < 1:1167062/96‑1 (MQ=255) atatTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTgg < 2:1136881/58‑1 (MQ=255) atatTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTgg > 1:1136881/1‑58 (MQ=255) tCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTCGGGCGCAGCGAGTAAGTCTTGAGTTGTGCTGCGAAGTCGCGCAGTGCCTGGATGCCGCTgg > 2:269497/1‑150 (MQ=255) cGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTCGGGCGCAGCGAGTAAGTCTTGAGTTGTGCTGCGAAGTCGCGCAGTGCCTGGATGCCGCTGGtt > 2:961914/1‑150 (MQ=255) gATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTCGGGCGCAGCGAGTAAGTCTTGAGTTGTGCTGCGAAGTCGCGCAGTGCCTGGATGCCGCTGGTTTc < 1:269497/150‑1 (MQ=255) ggggCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTCGGGCGCAGCGAGTAAGTCTTGAGTTGTGCTGCGAAGTCGCGCAGTGCCTGGATGCCGCTGGTTTCGGCCTCATGTACCCAGTc < 1:1317588/150‑1 (MQ=255) gAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTCGGGCGCAGCGAGTAAGTCTTGAGTTGTGCTGCGAAGTCGCGCAGTGCCTGGATGCCGCTGGTTTCGGCCTCATGTACCCAGTCTTTCa < 2:573692/150‑1 (MQ=255) gctCCCAATGGCCCGCGCCGTTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTCGGGCGCAGCGAGTAAGTCTTGAGTTGTGCTGCGAAGTCGCGCAGTGCCTGGATGCCGCTGGTTTCGGCCTCATGTACCCAGTCTTTCATgg < 2:1149025/148‑1 (MQ=255) gTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTCGGGCGCAGCGAGTAAGTCTTGAGTTGTGCTGCGAAGTCGCGCAGTGCCTGGATGCCGCTGGTTTCGGCCTCATGTACCCAGTCTTTCATgg > 1:553382/1‑150 (MQ=255) gTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTCGGGCGCAGCGAGTAAGTCTTGAGTTGTGCTGCGAAGTCGCGCAGTGCCTGGATGCCGCTGGTTTCGGCCTCATGTACCCAGTCTTTCATgg > 2:422710/1‑150 (MQ=255) aaTGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTCGGGCGCAGCGAGTAAGTCTTGAGTTGTGGGGCGAAGTCGCGCAGTGCCTGGATGCCGCTGGTTTCGGCATCATGTATCCAGTCTTTCATGGCTGCCa > 1:1022793/1‑150 (MQ=255) tGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTCGGGCGCAGCGAGTAAGTCTTGAGTTGTGCTGCGAAGTCGCGCAGTGCCTGGATGCCGCTGGTTTCGGCCTCATGTACCCAGTCTTTCATGGCTGCCAGc < 1:961914/150‑1 (MQ=255) gCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTCGGGCGCAGCGAGTAAGTc < 2:1121881/67‑1 (MQ=255) gCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTCGGGCGCAGCGAGTAAGTc > 1:1121881/1‑67 (MQ=255) cACGCCCCCCAGCGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTCGGGCGCAGCGAGTAAGTCTTGAGTTGTGCTGCGAAGTCGCGCAGTGCCTGGATGCCGCTGGTTTCGGCCTCATGTACCCAGTCTTTCATGGCTGCCAGCATg > 2:784948/1‑150 (MQ=255) aCGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTCGGGCGCAGCGAGTAAGTCTTGAGTTGTGCTGCGAAGTCGCGCAGTGCCTg < 2:635187/97‑1 (MQ=255) aCGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTCGGGCGCAGCGAGTAAGTCTTGAGTTGTGCTGCGAAGTCGCGCAGTGCCTg > 1:635187/1‑97 (MQ=255) | GGGAAAATCGTTGGAATGTTCTTGGCCATGTGCACGGAGCAGGTCTCAACGTGAAAGCGTGCGGCCAGCATCCGGCCCGCCACGCAGGCGATATTCCGGATTCGAGTGGAGAGGTGGGGGCGAAGTTCCGAATGGCACGCCCCGCTGGGGGGCGTGCCGATCAACGGCGGTCAGGCGCCGGTCGGGCGCAGCGAGTAAGTCTTGAGTTGTGCTGCGAAGTCGCGCAGTGCCTGGATGCCGCTGGTTTCGGCCTCATGTACCCAGTCTTTCATGGCTGCCAGCATG > NC_002947/268599‑268883 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |