| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,791,129 | C→G | 6.6% | L154F (TTG→TTC) | sstT ← | serine/threonine transporter SstT |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,791,129 | 0 | C | G | 6.6% | 188.3 / 4.7 | 61 | L154F (TTG→TTC) | sstT | serine/threonine transporter SstT |
| Reads supporting (aligned to +/- strand): ref base C (31/26); new base G (2/2); total (33/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.36e-01 | |||||||||||
TGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGATCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAG > NC_002947/2790989‑2791278 | tGGGCCAGGGTGGAACTGATCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGATCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATg > 2:1101496/1‑150 (MQ=255) gggCCAGGGGGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGCCCACGCGTACGACCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATgg < 1:158464/150‑1 (MQ=255) ggggTGGAACGGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGATCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCAt < 2:1291782/149‑1 (MQ=255) gTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGATCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGa < 2:524057/139‑1 (MQ=255) gTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGATCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGa > 1:524057/1‑139 (MQ=255) gAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTAGTTTCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGc > 1:1034387/1‑150 (MQ=255) aCCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGATCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCg > 1:496131/1‑150 (MQ=255) cAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGATCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGAt > 1:1349321/1‑150 (MQ=255) gCCAAAGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGATCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGaa < 1:191108/150‑1 (MQ=255) gCCAAAGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGATCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCAGATGaa > 1:777153/1‑150 (MQ=255) aaGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGATCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTg < 2:1349735/150‑1 (MQ=255) aGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGATCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTgg > 1:1019499/1‑150 (MQ=255) gATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGATCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGc > 2:913738/1‑150 (MQ=255) cAGCGGGGCGAAGCGGATGACCACGCGTACGATCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAg < 1:896811/150‑1 (MQ=255) cGGATGACCACGCGTACGATCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCCCGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGAcc < 2:1127236/150‑1 (MQ=255) aggACCACGCGTACGATCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCACTCGCCAGCACGCCGATGCAGTTGGCGTTGAGCAGGGCATTGACCagg < 2:275377/148‑1 (MQ=255) ccACGCGTACGATCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGt > 2:197106/1‑150 (MQ=255) gATCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCATGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACAGGGTTGTCTACCGCGtt > 1:1266825/1‑150 (MQ=255) aTCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAg > 1:323632/1‑122 (MQ=255) aTCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAg < 2:323632/122‑1 (MQ=255) tCAGGGTTACACTAGTGGATAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCa < 2:1034387/150‑1 (MQ=255) tCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTcc > 2:221880/1‑149 (MQ=255) tCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCa < 2:1342869/150‑1 (MQ=255) gTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGcc > 1:176780/1‑81 (MQ=255) gTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGcc < 2:176780/81‑1 (MQ=255) gTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGtt > 2:1044840/1‑131 (MQ=255) gTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGtt < 1:1044840/131‑1 (MQ=255) acacCATTGGACAGGTCTTCGACCACGGTCCAGGTCGTTTCGCCGGCGTGGCTCAGGGCCACGCACAAGCCGATGGCCCATGTCAGCACGCCGATGAAGCTGGCGTTGAGCAGGGCATTGACCGAGGTGTCTACCGCGCTCAGCAACAgg > 2:121918/1‑150 (MQ=255) acCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGtt > 2:719334/1‑150 (MQ=255) cATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCt > 1:518553/1‑150 (MQ=255) cATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCt > 2:976668/1‑150 (MQ=255) gACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTgcagc > 2:720091/1‑150 (MQ=255) aCAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCaa > 1:820526/1‑58 (MQ=255) aCAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCaa < 2:820526/58‑1 (MQ=255) gTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGtt < 1:861268/114‑1 (MQ=255) gTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGtt > 2:861268/1‑114 (MQ=255) tCTTCGACCACGATACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCgg > 2:518466/1‑110 (MQ=255) tCTTCGACCACGATACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCgg < 1:518466/110‑1 (MQ=255) cTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCgg < 2:1122826/150‑1 (MQ=255) cACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGt < 2:258903/104‑1 (MQ=255) cACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGt > 1:258903/1‑104 (MQ=255) cACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATgcc > 1:1291965/1‑150 (MQ=255) ggTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATgccgcc > 2:718240/1‑150 (MQ=255) gTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCt > 1:1203655/1‑150 (MQ=255) gggTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGc > 2:1394978/1‑73 (MQ=255) gggTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGc < 1:1394978/73‑1 (MQ=255) ggTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATTGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACa < 1:95251/116‑1 (MQ=255) ggTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACa > 2:95251/1‑116 (MQ=255) tCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGgcgcgc > 2:675889/1‑150 (MQ=255) tttCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGACGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACGGGTTCTGCAGCACTTCGGCGAt < 1:100920/133‑1 (MQ=255) tttCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACGGGTTCTGCAGCACTTCGGCGAt > 2:100920/1‑133 (MQ=255) tCGCCGGCGTGGCGCAGGGCCACCCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGc < 2:1175379/150‑1 (MQ=255) cGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAgg < 2:444018/110‑1 (MQ=255) cGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAgg > 1:444018/1‑110 (MQ=255) ttgggCGTGGCCCTGCGCCACGCCGAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGt > 2:967038/4‑150 (MQ=255) ttgggCGTGGCCCTGCGCCACGCCGAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGt > 2:967042/4‑150 (MQ=255) gCCGGCGTGGCGCAGGGCCCCGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGt < 1:913738/150‑1 (MQ=255) ccGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTg < 1:675889/150‑1 (MQ=255) gccctgcgCCACGCCGAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCt < 1:967038/143‑1 (MQ=255) gccctgcgCCACGCCGAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCt < 1:967042/143‑1 (MQ=255) aCGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAgc < 2:1221178/150‑1 (MQ=255) ccAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGt < 1:126710/66‑1 (MQ=255) ccAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGt > 2:126710/1‑66 (MQ=255) cAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGAGCTGAGCCGGGCATTGACCCGGTTGTCTACCGCGTTTAGCAACATGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAg < 2:518553/150‑1 (MQ=255) | TGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGATCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGGGTCGTTTCGCCGGCGTGGCGCAGGGCCACGCCCAAGCCGATGGCCCATGTCAGCACGCCGATGAAGTTGGCGTTGAGCAGGGCATTGACCGGGTTGTCTACCGCGTTCAGCAACAGGTTCTGCAGCACTTCGGCGATGCCGCCTGGCGCGCTCAGCGTGGCCTCGCTGGTGCTTAGCGCCAG > NC_002947/2790989‑2791278 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |