Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,841,979 | T→A | 10.2% | intergenic (‑115/+137) | yqhD ← / ← PP_2493 | NAD(P)‑dependent alcohol dehydrogenase/RadC family protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,841,979 | 0 | T | A | 10.2% | 144.9 / 7.3 | 49 | intergenic (‑115/+137) | yqhD/PP_2493 | NAD(P)‑dependent alcohol dehydrogenase/RadC family protein |
Reads supporting (aligned to +/- strand): ref base T (24/20); new base A (2/3); total (26/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.55e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01 |
TCGCGTGGGGTTGTGGAAGTCAAAATTGAGCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAGGGTTGTTGCTAGGCACTGATGATAGGGCATCGGGAGTCATAGGTT > NC_002947/2841832‑2842124 | tCGCGTCGGGCTGTGGAAGTGAAAATTGAGCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTAGCTCATTATTTAGTGAAATTTTTATTGCAGAACTTCGTCGGCGCGCATTGCGCACCAAACAGCCGAAGATTGGTTAGAAgcttcc < 1:799452/150‑3 (MQ=255) gcgTGGGGTTGTGGAAGTCAAAATTGAGCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGGTAGAAgcttgctt < 2:729132/150‑1 (MQ=255) ggggTTGTGGAAGTCAAAATTGAGCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAGGCAAGCTTCTaa < 1:905605/150‑1 (MQ=255) ggggTTGTGGAAGTCAAAATTGAGCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCAAGCTTCTaa < 2:483351/150‑1 (MQ=255) gggTTGTGGAAGTCAAAATTGAGCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCAAGCTTCTaac < 1:519259/150‑2 (MQ=255) gAAGTCAAAATTGAGCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTTTTTTTTTTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATATCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCa > 2:1056423/1‑150 (MQ=255) gAAGTCAAAATTGAGCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGATGAAAATTGGTTAGAAGCTTTCTTCTAAAGGCAACCa > 2:319965/1‑150 (MQ=255) aaaaTTGAGCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTgg > 2:862876/1‑150 (MQ=255) aTTGAGCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGACTCTCGGCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGgtgt < 1:1241481/150‑1 (MQ=255) aTTGAGCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGgtgt < 1:368745/150‑1 (MQ=255) tACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTcc > 1:1313733/1‑150 (MQ=255) tCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCACACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTgg > 1:766836/1‑150 (MQ=255) cTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTaaa > 2:16410/1‑110 (MQ=255) cTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTaaa < 1:16410/110‑1 (MQ=255) ttAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTcc > 2:137615/1‑150 (MQ=255) ttAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTcc > 1:444633/1‑150 (MQ=255) tAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTccc > 1:1371365/1‑150 (MQ=255) tAGACCAGTCGTATATTTTGTGGTTAAATTTTTATTGCAGAAGCTCGTCAGCGCGCATTGCGCACAAAATAGCTGAAGATTGGTTAGATGCTTGCTTCTAAAGCGAACCAGCGTGGTGTTGCACTCCAGTGCATTCCTGGTCCCGAGCCa > 2:1156116/1‑150 (MQ=255) gACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCACACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCaaa < 2:766836/150‑1 (MQ=255) cAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTgg > 1:958135/1‑116 (MQ=255) cAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTgg < 2:958135/116‑1 (MQ=255) aGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTgg < 2:165789/134‑1 (MQ=255) aGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTgg > 1:165789/1‑134 (MQ=255) gTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGc < 1:815203/148‑1 (MQ=255) gTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGc > 2:815203/1‑148 (MQ=255) tataTTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTgcc > 2:1397012/1‑150 (MQ=255) tatTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTaaa > 1:761768/1‑89 (MQ=255) tatTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTaaa < 2:761768/89‑1 (MQ=255) tttttGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCaa < 2:1313733/150‑1 (MQ=255) tGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAg > 1:1126829/1‑89 (MQ=255) tGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAg < 2:1126829/89‑1 (MQ=255) gAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTa > 1:1399187/1‑150 (MQ=255) aTTGCAGAAGCTCGTCGGCGCGCATTGCGCACCACATAGCTGAAGACCGCGCGCATGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGCGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGGTCcgcg < 1:1156116/150‑1 (MQ=255) gCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGa > 1:1264259/1‑150 (MQ=255) cAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGAt > 1:33879/1‑150 (MQ=255) cgatcTCGTCGGCGCGCATTGCGAACCAAATAGATAAAGATTGGTTAGAAGCTTCATTCTAAAGGTAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCTGCCAAGCAGCGTAAGCTCCGCGCGATGt < 2:299008/146‑1 (MQ=255) gCTCGTCGGCGCGCATTGCGCACCAAATCGCTGAAGATTGGTTAGACGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCTTGGCTGCCAAGCAGCGTAAGCTCCGCGCGAGGTcag > 1:299008/1‑148 (MQ=255) gCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGa > 2:1127292/1‑150 (MQ=255) tcgtcgGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAgg < 2:1399187/150‑1 (MQ=255) tcgGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAGGgtt > 2:1311079/1‑150 (MQ=255) gcATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAGGGTTGTTGCTa < 1:1397012/150‑1 (MQ=255) cgccAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAGGGTTGTTGCTAGGCACtga < 1:163349/148‑1 (MQ=255) cAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAGGGTTGTTGCTAGGCACtgatga > 2:1005853/1‑150 (MQ=255) cctttAGAAGCAAGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAGGGTTGTTGCTAGGCACTGATGATAGGGCATCGGGAGt > 1:1116972/4‑150 (MQ=255) ctttAGAAGCAAGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAGGGTTGTTGCTAGGCACTGATGATAGGGCATCGGGAGTc > 2:766751/3‑150 (MQ=255) ttAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAGGGTTGTTGCTAGGCACTGATGATAGGGCATCGGGAGTCAt < 1:862876/150‑1 (MQ=255) ttAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAGGGTTGTTGCTAGGCACTGATGATAGGGCATCGGGAGTCAt < 1:137615/150‑1 (MQ=255) tAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAGGGTTGTTGCTAGGCACTGATGATAGGGCATCGGGAGTCATa < 2:1264259/150‑1 (MQ=255) gAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAagcagc < 2:590605/85‑1 (MQ=255) gAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAagcagc > 1:590605/1‑85 (MQ=255) aGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAGGGTTGTTGCTAGGCACTGATGATAGGGCATCGGGAGTCATAGGtt < 2:444633/150‑1 (MQ=255) | TCGCGTGGGGTTGTGGAAGTCAAAATTGAGCATAGATTTCTCTACTCCTTAAAAGTAGACCAGTCGTATATTTTTTGGTGAAATTTTTATTGCAGAAGCTCGTCGGCGCGCATTGCGCACCAAATAGCTGAAGATTGGTTAGAAGCTTGCTTCTAAAGGCAACCAAGTTGGTGTGGCATTCGTCTGCATTCCTGGTCCCGAGCCAAAGGCGTTGCCGCCAAGCAGCGTAAGCTCCGCGCGATGTCGAGGGTTGTTGCTAGGCACTGATGATAGGGCATCGGGAGTCATAGGTT > NC_002947/2841832‑2842124 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |