| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,030,147 | A→C | 9.1% | intergenic (+104/‑590) | pcaY → / → mgtA | aromatic acid chemoreceptor/ATP‑dependent magnesium transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,030,147 | 0 | A | C | 9.1% | 118.0 / 3.6 | 44 | intergenic (+104/‑590) | pcaY/mgtA | aromatic acid chemoreceptor/ATP‑dependent magnesium transporter |
| Reads supporting (aligned to +/- strand): ref base A (27/13); new base C (2/2); total (29/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.96e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.60e-01 | |||||||||||
GTGGGGGAGATGACGGCGTTGGTGGGGCGGTTCAAGGTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCGGGCAAGCCGCGCCAGAGCCTGATGC > NC_002947/3030002‑3030296 | gtggGGGAGATGACGGCGTTGGTGGGGCGGTTCAAGGTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAgcgc > 2:94904/1‑150 (MQ=255) tggGGGAGATGACGGCGTTGGTGGGGCGGTTCAAGGTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGcgcg > 1:954507/1‑150 (MQ=255) gaTGACGGCGTTGGTGGGGCGGTTCAAGGTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGCGCTCGGGGcggt < 1:987759/150‑4 (MQ=255) aaagcgcTGGTGGGGCGGTTCAAGGTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATACAGTTCGACCGCCCCGAGCGCGGGGCCtttttt > 2:1064550/4‑150 (MQ=255) tggtggGGCGGTTCAAGGTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTAATTACTATGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCa < 2:1058778/150‑1 (MQ=255) ggtggGGCGGTTCAAGGTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCAc > 1:1211403/1‑150 (MQ=255) ggCGGTTCAAGGTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTgaag > 1:224158/1‑150 (MQ=255) ggTTCAAGGTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAAt < 1:335441/150‑1 (MQ=255) gcCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCtcgtc > 2:1389029/1‑150 (MQ=255) cTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCTACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCTTCGc > 1:98153/1‑150 (MQ=255) cTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGc > 2:901615/1‑150 (MQ=255) ggAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTg > 1:328837/1‑150 (MQ=255) gAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGa > 2:76502/1‑150 (MQ=255) aaGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAAt < 2:1381690/150‑1 (MQ=255) gTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGACGAATggg > 1:48804/1‑149 (MQ=255) ttAAACTTATTTAAAGTTCCCCTTGCGGGTTAACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGcc > 2:874123/1‑150 (MQ=255) ttATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCa > 1:1277674/1‑150 (MQ=255) aTTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAgg < 2:1277674/150‑1 (MQ=255) tttAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTc < 1:108990/79‑1 (MQ=255) tttAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTc > 2:108990/1‑79 (MQ=255) tttAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGc > 1:205052/1‑150 (MQ=255) tCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAAc > 2:669312/1‑150 (MQ=255) ccTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCgg < 1:669312/150‑1 (MQ=255) cTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGa > 2:827205/1‑150 (MQ=255) ttGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGt < 1:1389029/150‑1 (MQ=255) tGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTc < 1:901615/150‑1 (MQ=255) ttCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTc > 1:1189131/1‑146 (MQ=255) ttCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTc < 2:1189131/146‑1 (MQ=255) ttCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGa > 1:560960/1‑150 (MQ=255) tactacGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACAccc > 1:751162/1‑150 (MQ=255) actacGCTTGAATACAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCt < 2:328837/150‑1 (MQ=255) gCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCg > 1:567295/1‑150 (MQ=255) aaTAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCGGGCaa > 2:1345325/1‑150 (MQ=255) aaTAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCGGGCaa > 2:203470/1‑150 (MQ=255) tAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCg < 2:1336850/117‑1 (MQ=255) tAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCg > 1:1336850/1‑117 (MQ=255) tAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCGGGCAAGc > 1:1019478/1‑150 (MQ=255) ttCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCGGGCAAGCCgcgc > 2:78742/1‑150 (MQ=255) ttCGACCGCCCCGAGCGCGGGGCCTTTTTTACCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCGGGCAAGCCgcgc > 1:1302457/1‑150 (MQ=255) aaaaaaggCCCCGCGCTCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCGGGCAAGCCgcgc > 1:483292/8‑150 (MQ=255) aaggCCCCGCGCTCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAGCCGGAACACCGGTCCCGACACCCTGGTCg < 2:229074/131‑1 (MQ=255) aaggCCCCGCGCTCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAGCCGGAACACCGGTCCCGACACCCTGGTCg > 1:229074/4‑134 (MQ=255) ccGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCGGGCAAGCCGCGCCAGAGCCTGa < 2:224158/150‑1 (MQ=255) cGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCGGGCAAGCCGCGCCAGAGCCTGAt < 2:560960/150‑1 (MQ=255) aGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCGGGCAAGCCGCGCCAGAGCCTGATGc < 1:203470/150‑1 (MQ=255) | GTGGGGGAGATGACGGCGTTGGTGGGGCGGTTCAAGGTTTGAGGCGCTGCGCCTGCGTGGAACATTAAGATAAGGTTAAACTTATTTAAAGTTCCCCTTGCGGGTTGACTTCGATACTACGCTTGAATAAAGTTCGACCGCCCCGAGCGCGGGGCCTTTTTTCCCTTCACTGAAGAATTCAATGGACACAGTATCTCGTCGCTGCCTGACCTCTGCCGAATGGCCTGGTCAGGCACTTGAACCGGAACACCGGTCCCGACACCCTGGTCGGGCAAGCCGCGCCAGAGCCTGATGC > NC_002947/3030002‑3030296 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |