| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,126,899 | G→C | 7.6% | A190G (GCC→GGC) | PP_2744 ← | ribose‑phosphate pyrophosphokinase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,126,899 | 0 | G | C | 7.6% | 184.6 / 5.2 | 62 | A190G (GCC→GGC) | PP_2744 | ribose‑phosphate pyrophosphokinase family protein |
| Reads supporting (aligned to +/- strand): ref base G (25/32); new base C (3/2); total (28/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.50e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.42e-01 | |||||||||||
CTGCCCCGTGCTGATCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTGGGTGCATTGCAGGTTCCAGCTCGGGATTCGGTAG > NC_002947/3126754‑3127036 | gtcacccGTGCTGATCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTg > 2:789153/5‑150 (MQ=255)cttccccGTGCTGATCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTg < 1:303001/147‑1 (MQ=255)cTGCCCCGTGCTGATCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTg < 1:1244713/150‑1 (MQ=255) gCCCCGTGCTGATCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGc < 1:1008600/150‑1 (MQ=255) ccccGTGCTGATCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCg > 1:876135/1‑150 (MQ=255) ccGTGCTGATCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTTCGCCAGGCCCTGGCgca < 2:302848/150‑3 (MQ=255) gATCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGTCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTc < 1:458860/150‑1 (MQ=255) gtcgAATACGATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGttt > 2:1369439/1‑150 (MQ=255) cgAATACGATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGa < 1:185702/150‑1 (MQ=255) tcgtACGATGACGGTGCTGCCTGCCACGTTACCGACGAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGAc < 1:8846/147‑1 (MQ=255) aCGATGACGGTGCTGCCTGCCACGTTACCGACTAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTCCGCCAGGGCATGACGCAACCGTACGGCGCCTTTCACgggg > 2:8846/1‑147 (MQ=255) cGATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCAc < 1:121078/150‑1 (MQ=255) cGATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCAc < 1:1369439/150‑1 (MQ=255) gATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGCCCTGGCgcac > 2:650418/1‑123 (MQ=255) gATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGCCCTGGCgcac < 1:650418/126‑4 (MQ=255) tgctgcCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGc > 2:1365393/1‑138 (MQ=255) tgctgcCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGc < 1:1365393/138‑1 (MQ=255) tgctgcCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCg < 2:396767/150‑1 (MQ=255) gctgcCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCgg < 1:390476/150‑1 (MQ=255) ctgcctgcCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGt < 1:874251/150‑1 (MQ=255) ctgcctgcCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTGTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGTCCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCggg < 1:1327122/150‑2 (MQ=255) gcctgccACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGGCAGGGCCTGGCGAAACTGCTc > 1:1326851/1‑120 (MQ=255) gcctgccACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTc < 2:1326851/120‑1 (MQ=255) tgccACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGaaa > 1:1119913/1‑111 (MQ=255) tgccACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGaaa < 2:1119913/111‑1 (MQ=255) gccACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACg > 1:48215/1‑150 (MQ=255) ccACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGt > 2:782515/1‑143 (MQ=255) ccACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGt < 1:782515/143‑1 (MQ=255) aCGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCt > 1:871923/1‑100 (MQ=255) aCGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCt < 2:871923/100‑1 (MQ=255) gACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGaaa < 1:969033/99‑1 (MQ=255) gACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGaaa > 2:969033/1‑99 (MQ=255) gACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGc > 1:679686/1‑150 (MQ=255) aGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGc < 1:1075262/150‑1 (MQ=255) gccgcTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAg > 2:51004/1‑150 (MQ=255) gcctgcctGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGAGAGTTTGACGCCACCGGTATGCGGTGACGCGACCGTGACCGCCTGCTCACCGAGTAGCGGGGc > 1:806798/1‑150 (MQ=255) atcttgctgGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAg < 1:790460/146‑1 (MQ=255) ctgGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTg < 1:51004/150‑1 (MQ=255) tgGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTgg < 2:48215/150‑1 (MQ=255) gCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGc > 2:1152892/1‑150 (MQ=255) ggTGTTTGTCCATCATGGCCACAGAGACCGGTCGCGCG‑AGCAGGGGCGCCATGGCCTGGCGAAACTGGTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGTCCAGGCGTTGGGCGa > 2:591498/1‑150 (MQ=255) ctcCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCG‑TTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTgg < 2:876135/150‑1 (MQ=255) tcCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGTGCGAATAGCTgg < 1:789153/150‑1 (MQ=255) tcCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTgg < 1:1152892/150‑1 (MQ=255) tcatGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTGACCGAGTAGCGGGGCGAGGCGTTGGTCGAATAGCGGGGTGc > 2:116899/1‑150 (MQ=255) aCCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGgc > 1:1149831/1‑53 (MQ=255) aCCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGgc < 2:1149831/53‑1 (MQ=255) aCCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTg < 2:1260946/90‑1 (MQ=255) aCCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTg > 1:1260946/1‑90 (MQ=255) aCCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTGGGTGCATTGCAgg > 2:201312/1‑150 (MQ=255) ccGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGCCAAGACCGTGAACGCCTCAATACCGAGCATCGTGGCCAGGCGTTGGGCGAATAGCTGGGTGCATTGCAGGt < 1:387962/150‑1 (MQ=255) agaCCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTGGGTGCATTGCAGGTTcc < 2:679686/150‑1 (MQ=255) gTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTGGGTGCATTGCAGGTTCCAGCTCg > 2:467959/1‑150 (MQ=255) aacgcgCCGAGCAGTTTCGCCAGGCCCTGGCGCACCTACT‑GGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTGGGTGCATTGCAGGTTCCAGCTCg > 1:1151037/3‑150 (MQ=37) gcgcC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTGGGTGCATTGCAGGTTc > 1:863022/1‑140 (MQ=255) gcgcC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTGGGTGCATTGCAGGTTc < 2:863022/140‑1 (MQ=255) agcagGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTGGGTGCATTGCAGGTTCCAGCTCGGGATTCgg > 2:91166/1‑150 (MQ=255) agtttcgcCAGGCCCTGGCGCACCTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTGGGTGCATTGCAGGTTCCAGCTCGGGATTCGGTAg > 2:539735/6‑150 (MQ=255) gTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCggg < 1:382450/91‑1 (MQ=255) gTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCggg > 2:382450/1‑91 (MQ=255) cAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATGTCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTGGGTGCATTGCAg < 2:1126900/120‑1 (MQ=255) cAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTGGGTGCATTGCAg > 1:1126900/1‑120 (MQ=255) | CTGCCCCGTGCTGATCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCCTGCTGGCGGTGTTTCTCCATCATGGCCACCGAGACCGGTCGCGCC‑AGCAGGTGCGCCAGGGCCTGGCGAAACTGCTCGGCGCGTTTGACGCCACCGATATCCGGTGACACGACCGTGACCGCCTGCTCACCGAGTAGCGGGGCCAGGCGTTGGGCGAATAGCTGGGTGCATTGCAGGTTCCAGCTCGGGATTCGGTAG > NC_002947/3126754‑3127036 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |