Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,312,732 | T→A | 11.1% | intergenic (+30/‑132) | PP_2912 → / → hemB | hypothetical protein/5‑aminolevulinate dehydratase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,312,732 | 0 | T | A | 11.1% | 126.4 / 7.4 | 46 | intergenic (+30/‑132) | PP_2912/hemB | hypothetical protein/5‑aminolevulinate dehydratase |
Reads supporting (aligned to +/- strand): ref base T (20/20); new base A (3/2); total (24/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.01e-01 |
TGCGTGAGATCGACGCCGCCCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTCATGTCCAACCAATTCC > NC_002947/3312590‑3312879 | tGCGTGAGATCGACGCCGCCCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCcgcg < 2:837176/150‑1 (MQ=255) agaTCGACGCCGCCCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGC‑GGGTAACCCCGCGAAGAgg < 2:1296151/150‑1 (MQ=255) gACGCCGCCCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAac < 1:1270642/150‑1 (MQ=255) gacgacGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACgg > 2:1172493/1‑150 (MQ=255) gacgCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCg > 2:554673/1‑150 (MQ=255) tcgCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCAtt < 1:554673/150‑1 (MQ=255) gccgaggccgagCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATtc < 1:589917/150‑1 (MQ=255) ggccggccAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCttt > 2:381763/1‑150 (MQ=255) ccggccAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTc > 2:674361/1‑150 (MQ=255) gccAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACt < 2:828320/150‑1 (MQ=255) ggCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCtt < 1:790930/139‑1 (MQ=255) ggCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTATCGTCATTTAGCCtt > 2:790930/1‑139 (MQ=255) gaggagGTAACGCCGCCCTTGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCa < 2:231135/126‑1 (MQ=255) gaggagGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCa > 1:231135/1‑126 (MQ=255) gaggTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAg > 2:967421/1‑150 (MQ=255) aggTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAgg < 1:1172493/150‑1 (MQ=255) aaCGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATa > 1:1416332/1‑150 (MQ=255) aCGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATaa > 2:879771/1‑150 (MQ=255) gccgccCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAgg < 1:381763/150‑1 (MQ=255) gccgccCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTGA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAgg > 1:982815/1‑150 (MQ=255) gccCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGtat > 2:810088/1‑150 (MQ=255) cccTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTCGCCTTTTCTCTGGCGCGCGACAGGCATAAGGtata < 2:237446/150‑1 (MQ=255) gCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGGCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTGCACTGGCGCGCGGCAGCCATAAGGTATGCGCCATTc > 1:498528/1‑150 (MQ=255) gtagtTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATtctc > 1:427792/1‑96 (MQ=255) gtagtTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATtctc < 2:427792/96‑1 (MQ=255) tagtTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGgc > 1:997029/1‑117 (MQ=255) tagtTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGgc < 2:997029/117‑1 (MQ=255) tagtTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGtt > 1:641748/1‑145 (MQ=255) tagtTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGtt < 2:641748/145‑1 (MQ=255) tATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCt < 1:967421/150‑1 (MQ=255) cTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGc > 2:868956/1‑150 (MQ=255) gggctctTCGC‑GGGTAACCCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATtctc > 1:1425105/4‑79 (MQ=25) ggCCTCTTCGCGGGTAAC‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATtctc < 2:1425105/78‑1 (MQ=25) gCCTCTTCGCGGGTAAC‑CCCGCGAAGAGGCAAACACAGGCAAACCACGGCAGTTGCCATTGACGCCAGACACATTCTCGTAATTTAGCCTTTTAAGTGGCGCGCGACAGGCGTAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTCATg > 2:360532/1‑150 (MQ=255) gCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTgg < 2:803376/99‑1 (MQ=255) gCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTgg > 1:803376/1‑99 (MQ=255) ctctTCGCGGGTAAC‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTCATGTc > 2:523212/1‑150 (MQ=255) tctTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTCAt > 2:600829/1‑146 (MQ=255) tctTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTCAt < 1:600829/146‑1 (MQ=255) ttCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACa > 2:77119/1‑103 (MQ=255) ttCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACa < 1:77119/103‑1 (MQ=255) ttCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTCATGTccaa < 2:1426982/150‑1 (MQ=255) tCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTCATGTccaac < 1:868956/150‑1 (MQ=255) cgGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGc > 1:1289070/1‑47 (MQ=255) cgGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGc < 2:1289070/47‑1 (MQ=255) gTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTCATGTCCAACCAATTca > 1:765109/1‑149 (MQ=255) | TGCGTGAGATCGACGCCGCCCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTCATGTCCAACCAATTCC > NC_002947/3312590‑3312879 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |