| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_002947 | 3,357,054 | Δ9,542 bp | [PP_2953]–PP_2962 | [PP_2953], PP_2954, PP_5543, PP_2955, PP_2956, PP_2957, grx, PP_2959, PP_2960, PP_2961, PP_2962 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 3357054 | 3366595 | 9542 | 59 [1] | [0] 58 | [PP_2953]–PP_2962 | [PP_2953],PP_2954,PP_5543,PP_2955,PP_2956,PP_2957,grx,PP_2959,PP_2960,PP_2961,PP_2962 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3357053 | 1 (0.020) | 56 (1.020) | 51/252 | 0.1 | 99.1% | coding (58/1008 nt) | PP_2953 | alcohol dehydrogenase |
| ? | NC_002947 | 3366596 = | 0 (0.000) | intergenic (+219/‑142) | PP_2962/PP_2964 | alcohol dehydrogenase/transposase | |||||
GAAAGTGTTGACGGGCAGGGCCCGTTTTTCCCGGACGCCTGGCACGCCAGACTCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3356906‑3357053‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTGGGGGATGTG > NC_002947/3366596‑3366742 GAAAGTGTTGACGGGCAGGGCCCGTTTTTCCCGGACGCCTGGCACGCCAGACTCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGG > 1:75292/1‑150GAAAGTGTTGACGGGCAGGGCCCGTTTTTCCCGGACGCCTGGCACGCCAGACTCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGG < 1:287125/150‑1 AAGTGTTGACGGGCAGGGCCCGTTTTTCCCGGACGCCTGGCACGCCCGACTCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGG > 1:1445377/1‑150 CCCGTTTTTCCCGGACGCCTGGCACGCCAGACTCGATGCCAAATCAAACCACATTTAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATTCCGAGATAAGGCA > 1:248467/1‑150 CCCGTTTTTCCCGGACGCCTGGCACGCCAGACTCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCAGAGATAAGGCA > 1:798817/1‑150 TTCCCGGACGCCTGGCACGCCAGACTCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCTTCTTCATCCCCAATGCCGTGCCTATCGATGGTCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTA < 1:917473/150‑1 cCGCATGGAATGCCAGACTCGATGCCAAATCAAACCACATTCAGCAGTTAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCTTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGTCATT < 2:248467/149‑1 GCCTGGCACGCCAGACTCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCG > 2:1076604/1‑150 GCCAGACTCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAA < 1:793861/121‑1 GCCAGACTCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAA > 2:793861/1‑121 ACTCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCGGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGT < 1:870186/142‑1 ACTCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCGGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGT > 2:870186/1‑142 TCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGG < 2:1415978/99‑1 TCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGG > 1:1415978/1‑99 GATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATT < 1:133481/150‑1 GCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGC > 1:1287420/1‑101 GCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGC < 2:1287420/101‑1 AAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAG < 2:1066702/150‑1 AAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGG < 2:111676/91‑1 AAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGG > 1:111676/1‑91 ACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTC < 2:844215/150‑1 GCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTC > 1:685637/1‑140 GCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTC < 2:685637/140‑1 GTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGC < 2:1118563/150‑1 TATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGG > 1:794146/1‑90 TATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGAAAAAATTAGG < 2:794146/90‑1 TGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCAT > 2:228325/1‑150 AAGCGATAAGTTTAATATACAAAGGGTTGCCTATCTAAGACCCTGCGTCTCTCCGGTGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTATGTAAAGATAGTAGATAAAAGGGTATTCGAGAGGCCGTGGCTTGCTGGTCATCCA > 2:1428152/1‑150 AGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCAC < 1:1076604/150‑1 CAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTG < 2:75292/150‑1 AGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATAT < 2:1015241/98‑1 AGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATAT > 1:1015241/1‑98 TTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTC < 2:1048079/81‑1 TTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTC > 1:1048079/1‑81 ATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCAGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCC > 1:29108/1‑150 TCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTT > 2:658667/1‑45 TCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTT < 1:658667/45‑1 ACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGC > 2:1173035/1‑118 ACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGC < 1:1173035/118‑1 AAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTAT > 1:845555/1‑150 TTGCCTATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGAT > 2:995498/1‑150 TATCGAAGACCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTT > 1:1327008/1‑150 ACCCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGC > 1:510230/1‑150 CCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGA < 2:524073/84‑1 CCTGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGA > 1:524073/1‑84 TGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTGG < 1:228325/150‑1 TGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGC > 2:709117/1‑135 TGCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGC < 1:709117/135‑1 GCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTGGG < 2:798817/150‑1 GCGTCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTGGG < 2:1327008/150‑1 TCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTGGGGGA > 1:541265/1‑150 TCTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTGGGGGA < 2:29108/150‑1 CTCTCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTGGGGGAT < 1:995498/150‑1 TCCGGGGTTATGTAGCGAAAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTGGGGGATGTG < 2:1445377/150‑1 TCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCT < 1:85163/135‑1 TCCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCT > 2:85163/1‑135 CGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTT < 1:60193/128‑1 CGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTT > 2:60193/1‑128 GAAAGTGTTGACGGGCAGGGCCCGTTTTTCCCGGACGCCTGGCACGCCAGACTCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3356906‑3357053‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTGGGGGATGTG > NC_002947/3366596‑3366742 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |