| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2553944 | NA (NA) | 45 (0.880) | 15/234 | 2.9 | 47.2% | intergenic (+32/‑119) | PP_5SF/PP_2240 | 5S ribosomal RNA/ABC transporter permease/ATP‑binding protein |
| ? | NC_002947 | 5307467 = | 55 (0.980) | intergenic (‑168/+18) | recC/PP_5SG | multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA | |||||
ACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAAT > NC_002947/2553818‑2554086 | accaccTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGc > 2:822550/1‑150 (MQ=11) accTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCaaa > 2:675546/1‑150 (MQ=32) catcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGa > 1:1451080/1‑150 (MQ=34) catcccGAACTCAGTAGTGAAACGATGCATCGCCGACGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGa > 2:71355/1‑150 (MQ=21) gAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCAAGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCt > 2:54685/1‑150 (MQ=21) tCAGTAGTGAAACTATGCATCGCCGATGGTAGTGTGGGGTTTACCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGaa > 2:393522/1‑150 (MQ=21) tCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGaa < 1:40477/150‑1 (MQ=34) tGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGc < 1:1299395/150‑1 (MQ=34) gAAACGATGCATCTCCGATGGTAGTGTGGGGTTTCCACACGTGTGAGTAGGACATCGTCAAGATTCATTTCGCAAAACCCCTACCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCg < 1:753651/150‑1 (MQ=11) gAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCg < 1:71355/150‑1 (MQ=34) gCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTAAAAAAAAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGga < 2:1171131/150‑1 (MQ=11) gCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCAAAAAAAAAAAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGga < 2:951753/150‑1 (MQ=11) cATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGgag > 1:171993/1‑150 (MQ=34) aTCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGgaga < 1:393522/150‑1 (MQ=34) cGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATg < 1:822550/150‑1 (MQ=34) ccGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCaaaaaaa < 2:672264/113‑1 (MQ=33) ccGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCaaaaaaa > 1:672264/1‑113 (MQ=34) cGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCa < 1:675546/150‑1 (MQ=34) tgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGcc < 1:528079/150‑1 (MQ=34) ggTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGgt < 1:86491/150‑1 (MQ=34) cccATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTcgc > 2:399671/1‑150 (MQ=37) ccATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTcgcg > 1:782251/1‑150 (MQ=38) aTGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCggg > 2:1334742/1‑150 (MQ=38) gatctgTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCAGGTGTTCGCGGGTAAAccc < 1:51100/145‑1 (MQ=255) agTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCGGGTAAAccc < 2:782251/150‑1 (MQ=38) gTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCGGGTAAACCCGCTcc > 1:742302/1‑144 (MQ=38) gTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCGGGTAAACCCGCTcc < 2:742302/144‑1 (MQ=38) gTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGG‑ACGGTATGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACaaa > 1:1124202/1‑150 (MQ=11) tCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACt > 2:421195/1‑72 (MQ=39) tCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACt < 1:421195/72‑1 (MQ=39) tCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCTAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACNAAt > 1:855051/1‑150 (MQ=255) tCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCgg > 1:896083/1‑130 (MQ=39) tCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCgg < 2:896083/130‑1 (MQ=39) aaGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCgg > 2:376765/1‑128 (MQ=39) aaGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCgg < 1:376765/128‑1 (MQ=39) aaGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCa < 1:1376829/150‑1 (MQ=40) tttCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAAtgt > 1:1256541/1‑150 (MQ=255) ttCGCAAAACCCCTAACTGCGCATGCAGGTAGGGTTTTTGTCTTTGGTGGGCAAAAAAACTGGACCATGT‑GAATGCACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAAtgtg < 1:399671/150‑1 (MQ=17) aaaaCCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGc < 2:1435127/64‑1 (MQ=40) aaaaCCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGc > 1:1435127/1‑64 (MQ=40) aCCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCAttt < 2:171993/150‑1 (MQ=255) cccTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTtat > 1:1151966/1‑150 (MQ=255) aTCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACaaa > 2:151772/1‑124 (MQ=40) aTCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACaaa < 1:151772/124‑1 (MQ=40) aTCTGCGCATGCAGGTAGGGGTTTTGTCTTTGCTGGCGAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCt < 2:855051/150‑1 (MQ=255) cTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGa < 1:1334742/150‑1 (MQ=255) cATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAAt < 1:1323125/150‑1 (MQ=255) cATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAAt < 2:1451080/150‑1 (MQ=255) cATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAAt > 2:1323125/1‑150 (MQ=255) gCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGc < 2:190950/127‑1 (MQ=255) gCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGc > 1:190950/1‑127 (MQ=255) | ACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGGTGGGCAAAAAAACTGGAACTGCTCGAAT‑CACTGCGGGAGCGGAGATGGCACCG‑GCGTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAATCATGAAATGTGCGTCATTTATACCTGACGAAT > NC_002947/2553818‑2554086 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |