New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 652785 | 45 (0.780) | 30 (0.610) | 21/226 | 1.7 | 61.1% | coding (1961/1962 nt) | ctpL | methyl‑accepting chemotaxis protein CtpL |
? | NC_002947 | = 4808204 | 0 (0.000) | intergenic (‑268/‑287) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
GGCTGGCCAGCAGTAGGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/652624‑652785 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgggcggcgctcgatctcCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCCGCCCATTGCCCTATACACACCGCGACACATTGT < NC_002947/4808204‑4808056 GGCTGGCCAGCAGTAGGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCG > 1:493581/1‑150 cctGCCAGCAGTAGGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCCGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGC < 1:1088363/147‑1 CCAGCAGTAGGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGACAGGGGTTACCCGCGAAGCGCCGCGCGGGCGGCGagg > 2:1088363/1‑147 CAGCAGTAGGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCG > 2:1386213/1‑150 GCAGTAGGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCCCGCGCGGCGCTtcgc < 2:868136/150‑5 AGTAGGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGGAGCGCCGCCCGCGCGGCGCTtcgcgg < 2:285864/150‑7 AGTAGGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCAGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCT < 1:111567/150‑1 GTAGGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCCCGCGCGGCGCTtcgcgg < 2:583829/149‑7 GTAGGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCCCGCGCGGCGCTtcgcgg > 1:583829/1‑143 GGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGG < 2:998651/104‑1 GGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGG > 1:998651/1‑104 aaatccCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAA > 2:623535/7‑140 aaatccCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAA < 1:623535/134‑1 cCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCT < 2:1481095/149‑1 GCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGA > 1:1170293/1‑150 GCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGC > 2:808027/1‑58 GCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGC < 1:808027/58‑1 TAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTC < 1:1290691/150‑1 TGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGCCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGC < 2:644628/150‑1 GCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCA > 1:104437/1‑150 CCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCCCGCGCGGCGCT > 2:586735/1‑53 CCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCCCGCGCGGCGCT < 1:586735/53‑1 CCGAAACAAACGTAGAAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAA > 1:1407422/1‑150 CGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGC < 1:292464/114‑1 CGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGC > 2:292464/1‑114 AAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACAC < 2:104437/150‑1 AAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTC > 1:1342302/1‑53 AAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTC < 2:1342302/53‑1 AAACGTACGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACCCCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTAC < 2:918625/150‑1 AACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATC < 1:19859/50‑1 AACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATC > 2:19859/1‑50 ACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCC > 1:374447/1‑150 AGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCA > 2:420134/1‑150 gtcGCGGGTAAACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAA > 2:765680/4‑150 gtgTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGA > 1:804624/4‑150 TACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATT < 2:1392136/150‑1 CCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAAAACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCC > 1:851396/1‑150 CCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCCG > 1:858351/1‑150 CCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCCG > 1:18397/1‑150 CCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCCG > 2:1223957/1‑150 CCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAG < 1:755452/101‑1 CCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAG > 2:755452/1‑101 CGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCCGC > 2:625356/1‑150 GCGACGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAA < 2:1089697/89‑1 GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAA > 1:1089697/1‑89 CGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCCGCCC < 1:350312/150‑1 gAGCGCCGCCCGCGCGGCGCTTGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCT > 2:160249/2‑59 gAGCGCCGCCCGCGCGGCGCTTGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCT < 1:160249/58‑1 CGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCCGCCCATTGC < 1:1223957/150‑1 CGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCCGCCCATTGCCCTAT < 1:765680/150‑1 GCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCCGCCCATTGCCCTATA < 2:374447/150‑1 CGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCCGCCCATTGCCCTATACACACCGCGACA < 1:625356/150‑1 GATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCCGCCCATTGCCCTATACACACCGCGACAC > 1:920875/1‑150 TCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCCGCCCATTGCCCTATACACACCGCGACACAT > 1:562652/1‑150 TCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCCGCCCATTGCCCTATACACACCGCGACACAT < 2:242953/150‑1 CTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCCGCCCATTGCCCTATACACACCGCGACACATg < 2:1170293/150‑2 CCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCCGCCCATTGCCCTATACACACCTCGACACATTGT > 2:772365/1‑150 GGCTGGCCAGCAGTAGGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/652624‑652785 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgggcggcgctcgatctcCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCCGCCCATTGCCCTATACACACCGCGACACATTGT < NC_002947/4808204‑4808056 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |