| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 5,610,048 | C→A | S173I (AGC→ATC) | PP_4929 ← | LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,610,048 | 0 | C | A | 91.1% | 228.9 / 13.6 | 90 | S173I (AGC→ATC) | PP_4929 | LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (5/3); new base A (43/39); total (48/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.19e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.67e-01 | |||||||||||
CTGCGGGCTGATCGCCTCGCCGCCGGGGTAACCGCTTTGTTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGC > NC_002947/5609903‑5610192 | cTGCGGGCTGATCGCCTCGCCGCCGGGGTAACCGCTTTGTTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGcc > 2:311788/1‑150 (MQ=255)cTGCGGGCTGATCGCCTCGCCGCCGGGGTAACCGCTTTGTTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGcc > 2:263766/1‑150 (MQ=255) tGCGGGCTGATCGCCTCGCCGCCGGGGTAACCGCTTTGTTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGccc > 1:1457945/1‑150 (MQ=255) ggCTGATCGCCTCGCCGCCGGGGTAACCGCTTTGTTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACg > 1:165910/1‑150 (MQ=255) tGATCGCCTCGCCGCCGGGGTAACCGCTTTGTTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCAc > 1:1602464/1‑150 (MQ=255) cctcgccGCCGGGGTAACAGCTTTGTTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGgcgcc > 2:322980/1‑149 (MQ=255) ccgGGGTAACCGCTTTGTTGTGGCGTGATCAGCAACGGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCAAACGCACGGCGCTCCAAGGaa < 2:690186/150‑1 (MQ=255) ggTAACCGCTTTGTTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCCCGGCGCTCCAAGGAAGCCg > 2:755263/1‑150 (MQ=255) gTAACCGCTTTGTTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCCACTGTTGGCGGGTCACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCgg < 2:1357963/150‑1 (MQ=255) aaCCGCTTTGTTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGa < 2:339772/150‑1 (MQ=255) aCCGCTTTGTTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGAt < 2:1457945/150‑1 (MQ=255) cGCTTTGTTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGCAGCCgttattc > 2:1433119/1‑144 (MQ=255) cGCTTTGTTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGc > 1:1357207/1‑150 (MQ=255) cTTTGTTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCGATTGTTGGGGGGTGACCCCGCTTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGAACATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCtt < 2:468477/150‑1 (MQ=255) cTTTGTTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCtt < 1:785251/150‑1 (MQ=255) tttGTTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCttt > 2:535194/1‑150 (MQ=255) gttgtGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGGCCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGt < 2:619456/150‑1 (MQ=255) gttgtGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGt < 1:1284904/150‑1 (MQ=255) ggtgtgGGGTGATTAGCAACAGCCGGTGGCGGGCCAATTGTTGGCGGGGGACCCGGCCTTAGCCCGCGAGCGAGGGCACGACCGCGCACACCGTGACCATCTCCACGATGCCCACCGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGt < 2:500939/148‑1 (MQ=255) ttgtGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGGGGGGGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTg > 1:1634940/1‑150 (MQ=255) gtgGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTgga < 1:1235489/150‑1 (MQ=255) gtgGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTgga < 1:548044/150‑1 (MQ=255) tgGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTggag > 1:831906/1‑150 (MQ=255) tgGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTggag < 1:1162060/150‑1 (MQ=255) gTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCGACGCACGGCGCTGCAAGGAAGCCGGGATGCTTTCGTGGAGgaag < 2:1209164/150‑1 (MQ=255) tCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACa > 2:1458776/1‑150 (MQ=255) tCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACa > 1:843675/1‑150 (MQ=255) tCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACa > 1:1251618/1‑150 (MQ=255) cAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGcc > 2:44663/1‑124 (MQ=255) cAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGcc < 1:44663/124‑1 (MQ=255) cAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAg < 2:1602464/150‑1 (MQ=255) aGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAgg < 1:1635007/150‑1 (MQ=255) gCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGc > 2:252279/1‑150 (MQ=255) gCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGc > 2:924357/1‑150 (MQ=255) aaCTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGc > 1:511324/1‑148 (MQ=255) aaCTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGc < 2:511324/148‑1 (MQ=255) tGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCACCGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGa > 2:1097469/1‑150 (MQ=255) ccGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGTGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCTCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATc < 1:486140/150‑1 (MQ=255) ccGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCa > 2:1266262/1‑97 (MQ=255) ccGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCa < 1:1266262/97‑1 (MQ=255) ggTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCgg < 2:1015380/150‑1 (MQ=255) gTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGgc < 1:924357/150‑1 (MQ=255) cGGGCCAATTGTTGGAGCGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGgcgcgc > 1:60010/1‑150 (MQ=255) cAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTc > 1:514955/1‑150 (MQ=255) cAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTc > 2:210390/1‑150 (MQ=255) cAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAAATCGGCGCGCCGCTc > 2:400690/1‑150 (MQ=255) aaTTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTcc > 1:420068/1‑150 (MQ=255) aaTTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCAc < 2:1173554/85‑1 (MQ=255) aaTTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCAc > 1:1173554/1‑85 (MQ=255) aaTTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTcc > 1:1003296/1‑150 (MQ=255) aaTTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTcc > 2:1551528/1‑150 (MQ=255) aaTTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACAAAGTAACCATCTCCACAACTCCCAACGGAGGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTcc > 1:211937/1‑150 (MQ=255) ggCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGACCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCt > 1:535645/1‑150 (MQ=255) gCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTggag > 2:719878/1‑111 (MQ=255) gCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTggag < 1:719878/111‑1 (MQ=255) gggACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCCGCTTgcgc < 2:385585/148‑1 (MQ=255) ggCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACAt > 2:393610/1‑150 (MQ=255) ccTTCGCCCGCCCGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGTCGCTCCACCAGCTTGCGCGCCACATCg < 1:977265/150‑1 (MQ=255) ttCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGcc > 1:341320/1‑150 (MQ=255) ccgccAGCGGGTGGCCCACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTggg < 2:314568/150‑1 (MQ=255) gggTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTg < 1:393610/150‑1 (MQ=255) ggTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTgg < 2:1251618/150‑1 (MQ=255) gTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGc < 2:843675/150‑1 (MQ=255) tGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGcc < 2:1256435/150‑1 (MQ=255) ggCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCa < 2:165910/150‑1 (MQ=255) ccGACCGCGCACACCGTAACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGt < 2:607886/150‑1 (MQ=255) gACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTg > 2:683965/1‑150 (MQ=255) aCCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTCCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGc > 1:552678/1‑150 (MQ=255) ccGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGc > 1:49338/1‑149 (MQ=255) ccGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGc < 2:49338/149‑1 (MQ=255) cgcgCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGccc < 1:1004016/85‑1 (MQ=255) cgcgCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGccc > 2:1004016/1‑85 (MQ=255) acacCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCGGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCa > 1:942384/1‑150 (MQ=255) acacCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCa < 1:1551528/150‑1 (MQ=255) acacCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCa < 1:683965/150‑1 (MQ=255) cGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACCGGTCGGGATCGGCGCGCCGCTCCACCAGCTGGAGCGCCACATCGCTCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGaa > 1:827270/1‑150 (MQ=255) cGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGcc < 2:1338240/117‑1 (MQ=255) cGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGcc > 1:1338240/1‑117 (MQ=255) cGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGaa > 1:137925/1‑150 (MQ=255) gTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCGGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAAc < 2:942384/150‑1 (MQ=255) gTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAAc > 2:261028/1‑150 (MQ=255) gTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAAc < 1:1311007/150‑1 (MQ=255) ccATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGt < 1:688252/150‑1 (MQ=255) cATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTa > 2:651659/1‑150 (MQ=255) aTCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCg < 2:788279/75‑1 (MQ=255) aTCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCg > 1:788279/1‑75 (MQ=255) tctcCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGc > 2:320473/1‑150 (MQ=255) tcCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCg > 1:316201/1‑72 (MQ=255) tcCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCg < 2:316201/72‑1 (MQ=255) ccACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGc > 1:885762/1‑150 (MQ=255) | CTGCGGGCTGATCGCCTCGCCGCCGGGGTAACCGCTTTGTTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGC > NC_002947/5609903‑5610192 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |