| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,656,054 | Δ1 bp | 11.8% | coding (757/4527 nt) | PP_1449 ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,656,054 | 0 | G | . | 11.8% | 99.3 / 8.8 | 34 | coding (757/4527 nt) | PP_1449 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (18/12); new base . (2/2); total (20/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.32e-01 | |||||||||||
GGCGGTCGCCACTGCCGCTGACATGCAGGCCCCCGGCCGAGCTGATGTCGACCCCTTCGGTGCCCAGAATCTGCGAGGCCCCCACACGCACACCCGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAGGGGCTGGGCAGGTGTTCGACCACCTCGCCGCTGCGGCTGTCGATACGGTTGCGGCCGACAGTGATGTCGAGCGTTTCGCTGGCCATGAGCAAGCCTTTGCTGTCCA > NC_002947/1655919‑1656197 | ggCGGTCGCCACTGCCGCTGACATGCAGGCCCCCGGCCGAGCTGATGTCGACCCCTTCGGTGCCCAGAATCTGCGAGGCCCCCACACGCACACCCGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACa < 2:644102/150‑1 (MQ=255) tGCCGCTGACATGCAGGCCCCCGGCCGAGCTGATGTCGACCCCTTCGGTGCCCAGAATCTGCGAGGCCCCCACACGCACACCCGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCTAACAGGCTGGCATCaa < 1:147790/150‑1 (MQ=255) cGCTGACATGCAGGCCCCCGGCCGAGCTGATGTCGACCCCTTCGGTGCCCAGAATCTGCGAGGCCCCCACACGCACACCCGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGC‑CATGCGCGCCggg < 2:651368/133‑3 (MQ=255) cGCTGACATGCAGGCCCCCGGCCGAGCTGATGTCGACCCCTTCGGTGCCCAGAATCTGCGAGGCCCCCACACGCACACCCGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGC‑CATGCGCGCCggg > 1:651368/1‑131 (MQ=255) gACATGCAGGCCCCCGGCCGAGCTGATGTCGACCCCTTCGGTGCCCAGAATCTGCGAGGCCCCCACACGCACACCCGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGt < 1:600963/150‑1 (MQ=255) tGCAGGCCCCCGGCCGAGCTGATGTCGACCCCTTCGGTGCCCAGAATCTGCGAGGCCCCCACACGCACACCCGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAg < 2:715269/150‑1 (MQ=255) gCAGGCCCCCGGCCGAGCTGATGTCGACCCCTTCGGTGCCCAGAATCTGCGAGGCCCCCACACGCACACCCGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAgg > 1:24670/1‑150 (MQ=255) ggCCCCCGGCCGAGCTGATGTCGACCCCTTCGGTGCCCAGAATCTGCGAGGCCCCCACACGCACACCCGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAGGGGc > 1:838176/1‑150 (MQ=255) ccccGGCCGAGCTGATGTCGACCCCTTCGGTGCCCAGAATCTGCGAGGCCCCCACACGCACACCCGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGC‑CATGCGCGCCgggc < 1:77272/119‑4 (MQ=255) ccccGGCCGAGCTGATGTCGACCCCTTCGGTGCCCAGAATCTGCGAGGCCCCCACACGCACACCCGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGC‑CATGCGCGCCgggc > 2:77272/1‑116 (MQ=255) cccGGCCGAGCTGATGTCGACCCCTTCGGTGCCCAGAATCTGCGAGGCCCCCACACGCACACCCGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAGGGGCTggg > 1:651219/1‑150 (MQ=255) ccccTTCGGTGCCCAGAATCTGCGAGGCCCCCACACGCACACCCGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAGGGGCTGGGCAGGTGTTCGACCACCTcgc > 2:379212/1‑150 (MQ=255) ccAGAATCTGCGAGGCCCCCACACGCACACCCGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAGGGGCTGGGCAg > 2:850231/1‑121 (MQ=255) ccAGAATCTGCGAGGCCCCCACACGCACACCCGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAGGGGCTGGGCAg < 1:850231/121‑1 (MQ=255) cAGAATCTGCGAGGCCCCCACACGCACACCCGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAGGGGCTGGGCAGGTGTTCGACCACCTCGCCGCTGCGGCTGTc < 1:329997/150‑1 (MQ=255) cAGAATCTGCGAGGCCCCCACACGCACACCCGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAGGGGCTGGGCAGGTGTTCGACCACCTCGCCGCTGCGGCTGTc > 1:145982/1‑150 (MQ=255) ggCCCCCACACGCACACCCGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAGGGGCTGGGCAGGTGTTCGACCACCTCGCCGCTGCGGCTGTCGATACGGTTGCg < 1:379212/150‑1 (MQ=255) ccccACACGCACACCCGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAGGGGCTGGGCAGGTGTTCGACCACCTCGCCGCTGCGGCTGTCGATACGGTTGCGGcc > 1:54380/1‑150 (MQ=255) acGCACACCCGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAGGGGCTGGGCAGGTGTTCGACCACCTCGCCGCTGCGACTGTCGATACGGTTGCGGCCGACAGt < 2:838176/150‑1 (MQ=255) gCACACCCGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACa > 1:704724/1‑63 (MQ=255) gCACACCCGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACa < 2:704724/63‑1 (MQ=255) ccGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAGGGGCTGGGCAGGTGTTCGac < 1:610585/100‑1 (MQ=255) ccGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAGGGGCTGGGCAGGTGTTCGac > 2:610585/1‑100 (MQ=255) ccGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAGGGGCTGGGCAGGTGTTCGACCACCTCGCCGCTGCGGCTGTCGATACGGTTGCGGCCGACAGt < 2:647651/142‑1 (MQ=255) ccGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAGGGGCTGGGCAGGTGTTCGACCACCTCGCCGCTGCGGCTGTCGATACGGTTGCGGCCGACAGt > 1:647651/1‑142 (MQ=255) gcCTTCGGTAGTACTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAGGGGCTGGGCAGGTGTTCGACCACCTCGCCGCTGCGGCTGTCGATACGGTTGCGGCCGACAGTGATGTCGAGCGt > 1:69453/1‑150 (MQ=255) cTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAGGGGCTGGGCAGGTGTTCGACCACCTCGCCGCTGCGGCTGTCGATACGGTTGCGGCCGACAGTGATGTCGAGCGTTTCGCTGGCCATg > 1:407190/1‑150 (MQ=255) aCCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAGGGGCTGGGCAGgtgt < 2:48390/75‑1 (MQ=255) aCCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAGGGGCTGGGCAGgtgt > 1:48390/1‑75 (MQ=255) acacGGATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAGGGGCTGGGCAGGTGTTCGACCACCTCGCCGCTGCGGCTGTCGATACGGTTGCGGCCGACAGTGATGTCGAGCGTTTCGCTGGCCATGAGCAAg > 1:551847/1‑150 (MQ=255) gATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAGGGGCTGGGCAGGTGTTCGACCACCTCGCCGCTGCGGCTGTCGATACGGTTGCGGCCGACAGTGATGTCGAGCGTTTCGCTGGCCATGAGCAAGCCttt > 2:362512/1‑150 (MQ=255) aTACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAGGGGCTGGGCAGGTGTTCGACCACCTCGCCGCTGCGGCTGTCGATACGGTTGCGGCCGACAGTGATGTCGAGCGTTTCGCTGGCCATGAGCAAGCCTTTg > 2:485498/1‑150 (MQ=255) ccGGCGCGCATG‑GCGCCGAACAGGCTGGCAGCAATGCTCGTGGAGGGGCTGGGCAGGTGTTCGACCAACTCGCCGCTGCGGCTGTCGATACGGTTGCGGCCGACAGTGATGTAGAGCGTTTTGCTGGCCATGAGCAAGCATTTGGTGTcc > 1:342284/1‑150 (MQ=255) cGGCGCGCAAG‑GCGACGAACAGAATGACCTCAATGATCGTGGAGAGGCTGGGCAAGTGTTCGACCAACAAGCCGATGCGGCTGTCGATAAGGTTGCGGCCGAAAGTGATGACGAGCGTTTCGCTTGCAATGAGCAAGCCTTTGCTGTCCa > 2:601782/1‑150 (MQ=255) | GGCGGTCGCCACTGCCGCTGACATGCAGGCCCCCGGCCGAGCTGATGTCGACCCCTTCGGTGCCCAGAATCTGCGAGGCCCCCACACGCACACCCGCGCCTTCGGTAGTACTTACCACACGGATACGCCCGGCGCGCATG‑GCGCCGAACAGGCTGGCATCAATGCTCGTGGAGGGGCTGGGCAGGTGTTCGACCACCTCGCCGCTGCGGCTGTCGATACGGTTGCGGCCGACAGTGATGTCGAGCGTTTCGCTGGCCATGAGCAAGCCTTTGCTGTCCA > NC_002947/1655919‑1656197 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |