| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,882,278 | Δ1 bp | 13.8% | coding (893/1416 nt) | oprN → | multidrug RND transporter outer membrane protein OprN |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,882,278 | 0 | C | . | 13.8% | 81.8 / 8.7 | 29 | coding (893/1416 nt) | oprN | multidrug RND transporter outer membrane protein OprN |
| Reads supporting (aligned to +/- strand): ref base C (13/12); new base . (2/2); total (15/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.57e-01 | |||||||||||
GCGCCCTGACGCGCTCAGCGTAGACCTGTCGCCCAAGGCCCTGCCGGCCATCGCCAAGGCGCTGCCGGTCGGTGACCCGGGTGAGCTGCTGCGCCGCCGCCCGGACATCCGCAGCGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAACGTTGGC‑GTGGCCACCGCCGACCTGTTCCCGCGCGTCAGCCTCAGTGGCTTCCTCGGCTTTACCGCCGCCCGCGGCTCGCAGATCGGCTCTTCGGCGGCCAACGCCTGGGCACTGGGCCCGAGCATTACCTGGGCGGCCTT > NC_002947/3882138‑3882425 | gcgcCCTGACGCGCTCAGCGTAGACCTGTCGCCCAAGGCCCTGCCGGCCATCGCCAAGGCGCTGCCGGTCGGTGACCCGGGTGAGCTGCTGCGCCGCCGCCCGGACATCCGCAGCGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAACGt < 2:775180/150‑1 (MQ=255) gACGCGCTCAGCGTAGACCTGTCGCCCAAGGCCCTGCCGGCCATCGCCAAGGCGCTGCCGGTCGGTGACCCGGGTGAGCTGCTGCGCCGCCGCCCCGACATCCGCAGCGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAACGTTGGC‑GTg < 2:334419/150‑1 (MQ=255) gcTCAGCGTAGACCTGTCGCCCAAGGCCCTGCCGGCCATCGCCAAGGCGCTGCCGGTCGGTGACCCGGGTGAGCTGCTGCGCCGCCGCCCGGACATCCGCAGCGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAACGTTGGC‑GTGGCCAc < 1:692987/150‑1 (MQ=255) aGCGTAGACCTGTCGCCCAAGGCCCTGCCGGCCATCGCCAAGGCGCTGCCGGTCGGTGACCCGGGTGAGCTGCTGCGCCGCCGCCCGGACATCCGCAGCGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAACGTTGGC‑GTGGCCAccgcc > 1:12930/1‑150 (MQ=255) gTAGACCTGTCGCCCAAGGCCCTGCCGGCCATCGCCAAGGCGCTGCCGGTCGGTGACCCGGGTGAGCTGCTGCGCCGCCGCCCGGACATCCGCAGCGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAACGTTGGC‑GTGGCCACCGCCGAc > 1:531788/1‑150 (MQ=255) cTGTCGCCCAAGGCCCTGCCGGCCATCGCCAAGGCGCTGCCGGTCGGTGACCCGGGTGAGCTGCTGCGCCGCCGCCCGGACATCCGCAGCGCCGAGCGCCAGCTGGCGGTGGCCA‑CGCCAACGTTGGCGGTGGccgc > 1:790880/1‑135 (MQ=39) cTGTCGCCCAAGGCCCTGCCGGCCATCGCCAAGGCGCTGCCGGTCGGTGACCCGGGTGAGCTGCTGCGCCGCCGCCCGGACATCCGCAGCGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAACGTTGGC‑GTGGCCACCGCCGACCTGTTc < 1:519074/150‑1 (MQ=255) cTGTCGCCCAAGGCCCTGCCGGCCATCGCCAAGGCGCTGCCGGTCGGTGACCCGGGTGAGCTGCTGCACCGCCGCCCGGACATCCGCAGCGCCGAGCGCCAGCTGGCGGTGGCCA‑CGCCAACGTTGGCGGTGGccgc < 2:790880/137‑3 (MQ=39) ccAAGGCCCTGCCGGCCATCGCCAAGGCGCTGCCGGTCGGTGACCCGGGTGAGCTGCTGCGCCGCCGCCCGGACATCCGCAGCGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAACGTTGGC‑GTGGCCACCGCCGACCTGTTCCcgcgcg > 1:285365/1‑150 (MQ=255) cAAGGCCCTGCCGGCCATCGCCAAGGCGCTGCCGGTCGGTGACCCGGGTGAGCTGCTGCGCCGCCGCCCGGACATCCGCAGCGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAACGTTGGC‑GTGGCCACCGCCGACCTGTTCCCGCGCGt > 1:21338/1‑150 (MQ=255) ccGGCCATCGCCAAGGCGCTGCCGGTCGGTGACCCGGGTGAGCTGCTGCGCCGCCGCCCGGACATCCGCAGCGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAACGTTGGC‑GTGGCCACCGCCGACCTGTTCCCGCGCGTCAGCCTCAGt > 1:445745/1‑150 (MQ=255) gCCATCGCCAAGGCGCTGCCGGTCGGTGACCCGGGTGAGCTGCTGCGCCGCCGCCCGGACATCCGCAGCGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAACGTTGGC‑GTGGc > 1:647823/1‑113 (MQ=255) gCCATCGCCAAGGCGCTGCCGGTCGGTGACCCGGGTGAGCTGCTGCGCCGCCGCCCGGACATCCGCAGCGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAACGTTGGC‑GTGGc < 2:647823/113‑1 (MQ=255) ggtcggtGACCCGGGTGAGCTGCTGCGCCGCCGCCCGGACATCCGCAGCGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAACGTTGGC‑GTGGCCACCGCCGACCTGTTCCCGCGCGTCAGCCTCAGTGGCTTCCTCGGCTTTACcgccgc > 2:828002/1‑150 (MQ=255) ccGGGTGAGCTGCTGCGCCGCCGCCCGGACATCCGCAGCGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAACGTTGGC‑GTGGCCACCGCCGACCTGTTCCCGCGCGTCAGCCTCAGTGGCTTCCTCGGCTTTACCGCCGCCCGCGGCTCg > 2:690914/1‑150 (MQ=255) gctgcGCCGCCGCCCGGACATCCGCAGTGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAACGTTGGC‑GTGGCCACCGCCGACCTGTTCCCGCGCGTCAGCCTCAGTGGCTTCCTCGGCTTTACCGCCGCCCGCGGCTCGCAGATCGGctc > 2:370569/1‑150 (MQ=255) gctgcGCCGCCGCCCGGACATCCGCAGCGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAACGTTGGC‑GTGGCCACCGCCGACCTGTTCCCGCGCGTCAGCCTCAGTGGCTTCCTCGGCTTTACCGCCGCCCGCGGCTCGCAGATCGGctc > 2:410813/1‑150 (MQ=255) cgccCGGACATCCGCAGCGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAACGTTGGC‑GTGGCCACCGCCGACCTGTTCCCGCGCGTCAGCCTCAGTGGCTTCCTCGGCTTTACCGCCGCCCGCGGCTCGCAGATCGGCTCTTCGGCGGcc < 2:445745/150‑1 (MQ=255) ccGGACATCCGCAGCGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAACGTTGGC‑GTGGCCACCGCCGACCTGTTCCCGCGCGTCAGCCTCAGTGGCTTCCTCGGCTTTACCGCCGCCCGCGGCTCGCAGATCGGCTCTTCGGCGGCCAAc > 1:51333/1‑150 (MQ=255) aTCCGCAGTGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAACGTTGGC‑GTGGCCACCGCCGACCTGTTCCCGCGCGTCAGCCTCAGTGGCTTCCTCGGCTTTACCGCCGCCCGCGGCTCGCAGATCGGCTCTTCGGCGGCCAACGCCTgg < 1:370569/150‑1 (MQ=255) tCCGCAGCGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAACGTTGGC‑GTGGCCACCGCCGACCTGTTCCCGCGCGTCAGCCTCAGTGGCTTCCTCGGCTTTACCGCCGCCCGCGGCTCGCAGATCGGCTCTTCGGCGGCCAACGCCTggg < 1:452869/150‑1 (MQ=255) tCCGCAGCGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAACGTTGGC‑GTGGCCACCGCCGACCTGTTCCCGCGCGTCAGCCTCAGTGGCTTCCTCGGCTTTACCGCCGCCCGCGGCTCGCAGATCGGCTCTTCGGCGGCCAACGCCTggg > 2:77127/1‑150 (MQ=255) cGCAGCGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAACGTTGGC‑GTGGCCACCGCCGACCTGTTCCCGCGCGTCAGCCTCAGTGGCTTCCTCGGCTTTACCGCCGCCCGCGGCTCGCAGATCAGATCTTCGGCGGCCAAAGCCTAGGCa > 1:601890/1‑150 (MQ=255) cAGCGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAACGTTGGC‑GTGGCCACCGCCGACCTGTTCCCGCGCGTCAGCCTCAGTGGCTTCCTCGGCTTTACCGCCGCCCGCGGCTCGCAGATCGGCTCTTCGGCGGCCAACGCCTGGGCACt < 2:242306/150‑1 (MQ=255) aGCGCCAGCTGGCGGCGGCCACCGCCAACGTTGGC‑GTGGCCACCGCCGACCTGTTCCCGCGCGTCAGCCTCAGTGGCTTCCTCGGCTTTACCGCCGCCCGCGGCTCGCAGATCGGCTCTTCGGCGGCCAACGCCTGGGCACTGGGCCCGa < 1:77127/150‑1 (MQ=255) ggcggtggcCA‑CGCCAACGTTGGCGGTGGCCGCCGCCGACCTGTTCCCGCGCGTCAGCCTCAGTGGCTTCCTCGGCTTTACCGCCGCCCGCGGCTCGCAGATCGGCTCTTCGGCGGCCAACGCCTGGGCACTGGGCCCGAGCATTACCTg > 2:598758/1‑150 (MQ=39) gcggtggcCA‑CGCCAACGTTGGCGGTGGCCGCCGCCGACCTGTTCCCGCGCGTCAGCCTCAGTGGCTTCCTCGGCTTTACCGCCGCCCGCGGCTCGCAGATCGGCTCTTCGGCGGCCAACGCCTGGGCACTGGGCCCGAGCATTACCTgg < 1:598758/150‑1 (MQ=39) ggcggcCACCGCCAACGTTGGC‑GTGGCCACCGCCGACCTGTTCCCGCGCGTCAGCCTCAGTGGCTTCCTCGGCTTTACCGCCGCCCGCGGCTCGCAGATCGGCTCTTCGGCGCCCAACGCCTGGGCACTGGGCCCGAGCATTACCTGggc < 1:690914/150‑1 (MQ=255) cACCGCCAACGTTGGC‑GTGGCCACCGCCGACCTGTTCCCGCGCGTCAGCCTCAGTGGCTTCCTCGGCTTTACCGCCGCCCGCGGCTCGCAGATCGGCTCTTCGGCGGCTAACGCCTGGGCACTGGGCCCGAGCATTACCTGGGCGGCCtt < 1:410813/150‑1 (MQ=255) | GCGCCCTGACGCGCTCAGCGTAGACCTGTCGCCCAAGGCCCTGCCGGCCATCGCCAAGGCGCTGCCGGTCGGTGACCCGGGTGAGCTGCTGCGCCGCCGCCCGGACATCCGCAGCGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAACGTTGGC‑GTGGCCACCGCCGACCTGTTCCCGCGCGTCAGCCTCAGTGGCTTCCTCGGCTTTACCGCCGCCCGCGGCTCGCAGATCGGCTCTTCGGCGGCCAACGCCTGGGCACTGGGCCCGAGCATTACCTGGGCGGCCTT > NC_002947/3882138‑3882425 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |