| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,288,998 | Δ1 bp | 15.6% | coding (169/822 nt) | PP_3760 ← | methyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,288,998 | 0 | C | . | 15.6% | 81.9 / 13.2 | 32 | coding (169/822 nt) | PP_3760 | methyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (14/13); new base . (2/3); total (16/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.77e-01 | |||||||||||
CAGACTTTGATCGACGGCCAGGTGCGCAGCAGCGGCACCACTTCGTTGCGCACGGCAAGGAAGTGGTCAGGGTCACGGAACATCTCGCTGACCGGGATCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCAGACACCGTCAGACAATCGAACTGACGCAGCGCGTGGAGAATCCGGCGCTT‑GATCGAAGCGCCGGAATAATTGCGGAAATCGTAGCTGTACTTGAGGTAGATCGCCTCGATCAGCAGTCGGATCTCGATGT > NC_002947/4288853‑4289144 | cAGACTTTGATCGACGGCCAGGTGCGCAGCAGCGGCACCACTTCGTTGCGCACGGCAAGGAAGTGGTCAGGGTCACGGAACATCTCGCTGACCGGGATCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACgcgc > 2:776893/1‑150 (MQ=255) tgttCGACGGCCAGGTGCGCAGCAGCGGCACCACTTCGTTGCGCACGGCAAGGAAGTGGTCAGGGTCACGGAACATCTCGCTGACCGGGACCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGA‑GCGCGTCCTGCa < 2:134327/147‑1 (MQ=255) gACGGCCAGGTGCGCAGCAGCGGCACCACTTCGTTGCGCACGGCAAGGAAGTGGTCAGGGTCACGGAACATCTCGCTGACCGGGATCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCa < 1:306507/150‑1 (MQ=255) gACGGCCAGGTGCGCAGCAGCGGCACCACTTCGTTGCGCACGGCAAGGAAGTGGTCAGGGTCACGGAACATCTCGCTGACCGGGATCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCa < 1:848351/150‑1 (MQ=255) gcagcGGCACCACTTCGTTGCGCACGGCAAGGAAGTGGTCAGGGTCACGGAACATCTCGCTGACCGGGATCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCAGACACCGTCAGACAAt > 2:616847/1‑150 (MQ=255) accacTTCGTTGCGCACGGCAAGGAAGTGGTCAGGGTCACGGAACATCTCGCTGACCGGGATCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCAGACACCGTCAGACAATCGAACTGa > 2:713571/1‑150 (MQ=255) ttGCGCACGGCAAGGAAGTGGTCAGGGTCACGGAACATCTCGCTGACCGGGATCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGA‑GCGCGTCCTGCac < 2:761817/113‑2 (MQ=255) ttGCGCACGGCAAGGAAGTGGTCAGGGTCACGGAACATCTCGCTGACCGGGATCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGA‑GCGCGTCCTGCac > 1:761817/1‑112 (MQ=255) aaGTGGTCAGGGTCACGGAACATCTCGCTGACCGGGATCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCAGACACCGTCAGACAATCGAACTGACGCAGCGCGTGGAGAATCCGgcgc > 2:431262/1‑150 (MQ=255) aaGTGGTCAGGGTCACGGAACATCTCGCTGACCGGGATCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCAGACACCGTCAGACAATCGAACTGACGCAGCGCGTGGAGAATCCGgcgc < 1:431262/150‑1 (MQ=255) gTCAGGGTCACGGAACATCTCGCTGACCGGGATCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCAGACACCGTCAGACAATCGAACTGACGCAGCGCGTGGAGAATc > 1:504379/1‑139 (MQ=255) gTCAGGGTCACGGAACATCTCGCTGACCGGGATCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCAGACACCGTCAGACAATCGAACTGACGCAGCGCGTGGAGAATc < 2:504379/139‑1 (MQ=255) tCAGGGTCACGGAACATCTCGCTGACCGGGATCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCAGACACCGTCAGACAATCGAACTGACGCAGCGCGTGGAGAATCCGGCGCttcgat > 2:102843/1‑146 (MQ=255) tCAGGGTCACGGAACATCTCGCTGACCGGGATCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCAGACACCGTCAGACAATCGAACTGACGCAGCGCGTGGAGAATCCGGCGCTT‑GATc < 2:712288/150‑1 (MQ=255) cGGAACATCTCGCTGACCGGGATCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCGGCAACGCAGACACCGTCAGACAATCGAACTGACGCAGCGCGTGGAGAATCCGGCGCTTCGATCG‑AGCGCCg < 1:102843/150‑1 (MQ=255) cATCTCGCTGACCGGGATCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAAGACCACCACCGTCAGACAATCGAACTGACGCAGCGCGTGGAGAATCCGGCGCTT‑GATCGAAGCGCCGGaata > 1:53829/1‑150 (MQ=255) tGACCGGGATCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCAGACACCGTCa < 2:11212/84‑1 (MQ=255) tGACCGGGATCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCAGACACCGTCa > 1:11212/1‑84 (MQ=255) gACCGGGATCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCAGACACCGTCAGACAATCGAACTGACGCAGCGCGTGGAGAATCCGGCGCTT‑GATCGAAGCGCCGGAATAATTGCGGaa > 2:367851/1‑150 (MQ=255) cGGGATCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCAGACACCGTCAGACAATCGAACTGACGCAGCGCGTGGAGAATCCGGCGCTT‑GATCGAAGCGCCGGAATAATTGCGGAAATc < 1:121221/150‑1 (MQ=255) cGGGATCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCAGACACCGTCAGACAATCGAACTGACGCAGCGCGTGGAGAATCCGGCGCTT‑GATCGAAGCGCCGGAATAATTGCGGAAATc > 2:121221/1‑150 (MQ=255) cGGGATCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCAGACACCGTCAGACAATCGAACTGACGCAGCGCCTGGAGAATCCGGCGCTT‑GATCGAAGCGCCGGAATAATTGCGGAAATc < 1:103248/150‑1 (MQ=255) gATCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCAGACACCGTCAGACAATCGAACTGACGCAGCGCGTGGAGAATCCGGCGCTT‑GATCGAAGCGCCGGAATAATTGCGGAAATCGTa < 1:776893/150‑1 (MQ=255) tCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCAGACACCGTCAGACAATCGAACTGACGCAGCGCGTGGAGAATCCGGCGCTT‑GATCGAAGCGCCGGAATAATTGCGGAAATCGTAGCTGt > 1:371896/1‑150 (MQ=255) cTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCAGACACCGTCAGACAATCGAACTGACGCAGCGCGTGGAGAATCCGGCGCTT‑GATCGAAGCGCCGGAATAATTGCGGAAATCGTAGCTGTACTTGAg < 1:713571/150‑1 (MQ=255) tGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCAGACACCGTCAGACAATCGAACTGACGCAGCGCGTGGAGAATCCGGCGCTT‑GATCGAAg > 2:455521/1‑112 (MQ=255) tGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCAGACACCGTCAGACAATCGAACTGACGCAGCGCGTGGAGAATCCGGCGCTT‑GATCGAAg < 1:455521/112‑1 (MQ=255) gcagcaACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCAGACACCGTCAGACAATCGAACTGACGCAGCGCGTGGAGAATCCGGCGCTT‑GATCGAAGCGCCGGAATAATTGCGGAAATCGTAGCTGTACTTGAGGt > 1:811237/1‑150 (MQ=255) aCATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCAGACACCGTCAGACAATCGAACTGACGCAGCGCGTGGAGAATCCGGCGCTT‑GATCGAAGCGCCGGAATAATTGCGGAAATCGTAGCTGTACTTGAGGTAGATCGCCTCGATca < 2:811237/150‑1 (MQ=255) tGCAGGA‑GCGCGTCCTGCAACGCAGACACCGTCAGACAATCGAACTGACGCAGCGCGTGGAGAATCCGGCGCTT‑GATCGAAGCGCCGGAATAATTGCGGAAATCGTAGCTGTACTTGAGGTAGATCGCCTCGATCAGCAGTCGGAt > 2:503778/1‑146 (MQ=255) tGCAGGA‑GCGCGTCCTGCAACGCAGACACCGTCAGACAATCGAACTGACGCAGCGCGTGGAGAATCCGGCGCTT‑GATCGAAGCGCCGGAATAATTGCGGAAATCGTAGCTGTACTTGAGGTAGATCGCCTCGATCAGCAGTCGGAt < 1:503778/146‑1 (MQ=255) ggACGCGC‑TCCTGCAACGCAGACACCGTCAGACAATCGAACTGACGCAGCGCGTGGAGAATCCGGCGCTT‑GATCGAAGCGCCGGAATAATTGCGGAAATCGTAGCTGTACTTGAGGTAGATCGCCTCGATCAGCAGTCGGATCTCGATGt > 2:131785/1‑150 (MQ=255) | CAGACTTTGATCGACGGCCAGGTGCGCAGCAGCGGCACCACTTCGTTGCGCACGGCAAGGAAGTGGTCAGGGTCACGGAACATCTCGCTGACCGGGATCGTCAGGTACTGCAGCAACTGCATGAACATGCCCGGGTCGTGCAGGACGCGC‑TCCTGCAACGCAGACACCGTCAGACAATCGAACTGACGCAGCGCGTGGAGAATCCGGCGCTT‑GATCGAAGCGCCGGAATAATTGCGGAAATCGTAGCTGTACTTGAGGTAGATCGCCTCGATCAGCAGTCGGATCTCGATGT > NC_002947/4288853‑4289144 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |