New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1298079	NA (NA)	7 (0.230)	5/238	NT	NA	coding (1261/1329 nt)	PP_1133	transposase
	?	NC_002947	= 1298095	NA (NA)					coding (1277/1329 nt)	PP_1133	transposase

TTGGCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAGGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAG‑‑‑‑‑AAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1297927‑1298079 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagccCGGACCTG‑‑‑‑‑CCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCT  <  NC_002947/1298095‑1297947                                                                                                                                                                                                                                                                                                                          TTGGCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAGGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAG‑‑‑‑‑AA                                                                                                                                                               <  1:79045/150‑1                                      TACCAGCTGCGCCATCAAGGCCACTGCGCATAAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCAAAGCCCGGACCTG‑‑‑‑‑CCGGTCTTGGCTTCTGGTTTC                                                                                                                          >  2:98019/1‑150                                                      aaaGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAGAAGCAAAGCCCGTACCTG‑‑‑‑‑CCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCT                                                                                                          <  2:20831/147‑1                                                                                                     CAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAG‑‑‑‑‑AAGCCCGGACCTG‑‑‑‑‑CCGGTCTTGGCTTCTGG                                                                                                                              >  2:704884/1‑78                                                                                                     CAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAG‑‑‑‑‑AAGCCCGGACCTG‑‑‑‑‑CCGGTCTTGGCTTCT                                                                                                                                <  2:604112/76‑1                                                                                                      AAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCCCGGACCTG‑‑‑‑‑CCGGTCTT                                                                                                                                       >  2:730544/1‑68                                                                                                      AAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCCCGGACCTG‑‑‑‑‑CCGGTCTT                                                                                                                                       <  1:730544/68‑1                                                                                                                                  TTGAGGAGTTCGAAACCAG‑‑‑‑‑AAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGG                              >  1:98019/1‑150                                                                                                                                                 CCAG‑‑‑‑‑AAGCCAAGACCGG‑‑‑‑‑CAGGTCCGGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTG                                                                                  >  1:704884/1‑78                                                                                                                                                   AG‑‑‑‑‑AAGCCAAGACCGG‑‑‑‑‑CAGGTCCGGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTG                                                                                  <  1:604112/76‑1                                                                                                                                                          AAGCCCGGACCTG‑‑‑‑‑CCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGCGCAGCTGGTATCCATTCGAGTCA      >  2:156344/1‑150                                                                                                                                                          AAGCCCGGACCTG‑‑‑‑‑CCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGCGCAGCTGGTATCCATTCGAGTCA      >  2:429156/1‑150                                                                                                                                                          AAGCCCGGACCTG‑‑‑‑‑CCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGCGCAGCTGGTATCCATTCGAGTCA      >  1:174661/1‑150                                                                                                                                                          AAGCCCGGACCTG‑‑‑‑‑CCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGCGCAGCTG                      >  2:418918/1‑134                                                                                                                                                          AAGCCCGGACCTG‑‑‑‑‑CCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGCGCAGCTG                      <  1:418918/134‑1                                                                                                                                                          AAGCCCGGACCTG‑‑‑‑‑CCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGC                             <  1:603586/127‑1                                                                                                                                                          AAGCCCGGACCTG‑‑‑‑‑CCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGC                             >  2:603586/1‑127                                                                                                                                                           AGCCCGGACCTG‑‑‑‑‑CCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATG                               <  1:126052/124‑1                                                                                                                                                           AGCCCGGACCTG‑‑‑‑‑CCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATG                               >  2:126052/1‑124                                                                                                                                                           AGCCCGGACCTG‑‑‑‑‑CCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGT                                                                     >  2:255492/1‑86                                                                                                                                                           AGCCCGGACCTG‑‑‑‑‑CCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGT                                                                     <  1:255492/86‑1                                                                                                                                                             CCCGGACCTG‑‑‑‑‑CCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGCGCAGCT                       >  2:336810/1‑130                                                                                                                                                             CCCGGACCTG‑‑‑‑‑CCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGCGCAGCT                       <  1:336810/130‑1                                                                                                                                                              CCGGACCTG‑‑‑‑‑CCGGTCTTGGCTTCTGGTTTCGAACTCATCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCTGTGGCTTTGATGTCGCCGCTGGTCTCTATTCGAGTCAGTCT  >  2:237336/1‑150                                                                                                                                                                                                                                                                                                                          TTGGCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAGGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAG‑‑‑‑‑AAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1297927‑1298079 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagccCGGACCTG‑‑‑‑‑CCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCT  <  NC_002947/1298095‑1297947

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.