New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4169123 =	28 (0.880)	3 (0.100)	3/238	NT	9.9%	coding (814/2256 nt)	katG	catalase‑peroxidase
	?	NC_002947	4169137 =	28 (0.920)					coding (800/2256 nt)	katG	catalase‑peroxidase

TGGAAAACCCGCTGGCCGCCGTGCAGATGGGCCTGATCTATGTGAACCCGGAAGGCCCGGAAGGTAACCCCGACCCCGTGGCCTCGGGCAAGGACATCCGTGAAACCTTTGGCCGCATGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4169245‑4169123 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaAAGGTTTCACGGATGTCCTTGCCCGAGGCCACGGGGTCGGGGTTACCTTCCGGGCCTTCCGGGTTCACATAGATCAGGCCCATC  >  NC_002947/4169137‑4169220                                                                                                                                                                                                                 TGGAAAACCCGCTGGCCGCCGTGCAGATGGGCCTGATCTATGTGAACCCGGAAGGCCCGGAAGGTAACCCCGACCCCGTGGCCTCGGGCAAGGACATCCGTGAAACCTTTGGCCATGCGGCCAAAGGTTTCACGGATGTCCTTGCCCGAG                                                           <  1:175905/150‑1                                                                                                         ACCTTTGGCCGCATGGCCAAAGGTTTCACGGATGTCCTTGCCCGAGGCCACGGGGTCGGGGTTACCT                                      >  1:230726/1‑67                                                                                                         ACCTTTGGCCGCATGGCCAAAGGTTTCACGGATGTCCTTGCCCGAGGCCACGGGGTCGGGGTTACCT                                      <  2:230726/67‑1                                                                                                                          CAAAGGTTTCACGGATGTCCTTGCCCGAGGCCACGGGGTCGGGGTTACCTTCCGGGCCTTCCGGGTTCACATAGATCAGGCCCATC  >  1:407472/1‑86                                                                                                                          CAAAGGTTTCACGGATGTCCTTGCCCGAGGCCACGGGGTCGGGGTTACCTTCCGGGCCTTCCGGGTTCACATAGATCAGGCCCATC  <  2:407472/86‑1                                                                                                                                                                                                                 TGGAAAACCCGCTGGCCGCCGTGCAGATGGGCCTGATCTATGTGAACCCGGAAGGCCCGGAAGGTAACCCCGACCCCGTGGCCTCGGGCAAGGACATCCGTGAAACCTTTGGCCGCATGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4169245‑4169123 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaAAGGTTTCACGGATGTCCTTGCCCGAGGCCACGGGGTCGGGGTTACCTTCCGGGCCTTCCGGGTTCACATAGATCAGGCCCATC  >  NC_002947/4169137‑4169220

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.