| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5840670 | 23 (0.730) | 4 (0.130) | 6/234 | NT | 15.8% | intergenic (‑34/+2) | sseA/PP_5119 | 3‑mercaptopyruvate sulfurtransferase/TetR family transcriptional regulator |
| ? | NC_002947 | = 5840679 | 21 (0.700) | coding (659/666 nt) | PP_5119 | TetR family transcriptional regulator | |||||
GTCGAGGATCACCAACTTGGGCGAGCCCAGACGCTCGGCCAACTGCTGCGGGGTGATCAATTGCGCAAGGGGCATGACAATCTCCTGATCGATGGCACAAGAGCCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5840562‑5840670‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctggAGCTCTAGC‑CCAGGGCTCTTGTGCCATCGATCAGGAGATTGTCATGCCCCTTGCGCAATTGATCACCCCGCAGCAGTTGGCCGAGCGTCTGGGCTCGCCCAAGTTGGTGATCCTCGACTGCCGCTTTGCCCTCGAGGATGTGG < NC_002947/5840679‑5840537 GTCGAGGATCACCAACTTGGGCGAGCCCAGACGCTCGGCCAACTGCTGCGGGGTGATCAATTGCGCAAGGGGCATGACAATCTCCTGATCGATGGCACAAGAGCC > 1:457552/1‑105GTCGAGGATCACCAACTTGGGCGAGCCCAGACGCTCGGCCAACTGCTGCGGGGTGATCAATTGCGCAAGGGGCATGACAATCTCCTGATCGATGGCACAAGAGCC < 2:457552/105‑1 AACTGCTGCGGGGTGATCAATTGCGCAAGGGGCATGACAATCTCCTGATCGATGGCACAAGAGCCCTGGAGCTCTAGC‑CCAGGGCTC > 1:513019/1‑87 AACTGCTGCGGGGTGATCAATTGCGCAAGGGGCATGACAATCTCCTGATCGATGGCACAAGAGCCCTGGAGCTCTAGC‑CCAGGGCTC < 2:513019/87‑1 CAATCTCCTGATCGATGGCACAAGAGCCCTGG‑GCTAGAGCTCCAGGGCTCTTGTGCCATCGATCAGGAGATTGTCATGCCCCTTGCGCAATTGATCACCCCGCAGCAGTTGGCCGAGCGTCTGGGCTCGCCCAAGTTGG < 1:77326/139‑1 CAATCTCCTGATCGATGGCACAAGAGCCCTGG‑GCTAGAGCTCCAGGGCTCTTGTGCCATCGATCAGGAGATTGTCATGCCCCTTGCGCAATTGATCACCCCGCAGCAGTTGGCCGAGCGTCTGGGCTCGCCCAAGTTGG > 2:77326/1‑139 AAGAGCCCTGG‑GCTAGAGCTCCAGGGC‑CTTGTGCCATCGATCAGGAGATTGTCATGCCCCTTGCGCAATTGATCACCCCGCAGCAGTTGGCCGAGCGTCTGGGCTCGCCCAAGTTGGTGATCCT > 1:637492/1‑124 AAGAGCCCTGG‑GCTAGAGCTCCAGGGC‑CTTGTGCCATCGATCAGGAGATTGTCATGCCCCTTGCGCAATTGATCACCCCGCAGCAGTTGGCCGAGCGTCTGGGCTCGCCCAAGTTGGTGATCCT < 2:637492/124‑1 ggcgccGGAGCTCGAGC‑CCAGGGCGCTTGTGCCATCGATCAGGAGATTGTCATGCCCCTTGCGCAATTGATCACCCCGCAGCAGTTGGCCGAGCGTCTGGGCTCGCCCAAGTTGGTGATCCTCGACTGCCGCTTTGCCCTCGAGGATGTG < 2:607191/144‑1 GCCCTGGAGCTCTAGC‑CCAGGGCTCTTGTGCCATCGATCAGGAGATTGTCATGCCCCTTGCGCAATTGATCACCCCGCAGCAGTTGGCCGAGCGTCTGGGCTCGCCCAAGTTGGTGATCCTCGACTGCCGCTTTGCCCTCGAGGATGTGG > 2:456616/1‑150 CCTGGAGCTCTAGC‑CCAGGGCTCTTGTGCCATCGATCAGGAGATTGTCAT > 1:713140/1‑50 CCTGGAGCTCTAGC‑CCAGGGCTCTTGTGCCATCGATCAGGAGATTGTCAT < 2:713140/50‑1 GTCGAGGATCACCAACTTGGGCGAGCCCAGACGCTCGGCCAACTGCTGCGGGGTGATCAATTGCGCAAGGGGCATGACAATCTCCTGATCGATGGCACAAGAGCCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5840562‑5840670‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctggAGCTCTAGC‑CCAGGGCTCTTGTGCCATCGATCAGGAGATTGTCATGCCCCTTGCGCAATTGATCACCCCGCAGCAGTTGGCCGAGCGTCTGGGCTCGCCCAAGTTGGTGATCCTCGACTGCCGCTTTGCCCTCGAGGATGTGG < NC_002947/5840679‑5840537 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |