New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2761830	39 (1.230)	3 (0.100)	3/242	NT	7.2%	coding (368/630 nt)	PP_2415	GNAT family acetyltransferase
	?	NC_002947	= 2761862	39 (1.260)					coding (400/630 nt)	PP_2415	GNAT family acetyltransferase

CCGATGCTCGCCAACGCACCCTTGCCGCGTGACCTGGCGCATTTCGCCGACACTTACCTGGACGGTGCGGGCTGCTTTCTGGAAGCCCGTGAGGGTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGGCTGCTGCCTTGTTTGGTGCCTTGCGCGAACGGGCGATGCAAGCGGGCTTGGACTGCCTTTACTTGCATAC  >  NC_002947/2761682‑2761977                                                                                                                                                     |                                                                                                                                                    ccGATGCTCGCCAACGCACCCTTGCCGCGTGACCTGGCGCATTTCGCCGACACTTACCTGGACGGTGCGGGCTGCTTTCTGGAAGCCCGTGAGGGTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAg                                                                                                                                                    >  1:462618/1‑150 (MQ=255)        tCGCCAACGCACCCTTGCCGCGTGACCTGGCGCATTTCGCCGACACTTACCTGGACGGTGCGGGCTGCTTTCTGGAAGCCCGTGAGGGTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGAtt                                                                                                                                             >  2:144639/1‑150 (MQ=255)           ccAACGCACCCTTGCCGCGTGACCTGGCGCATTTCGCCGACACTTACCTGGACGGTGCGGGCTGCTTTCTGGAAGCCCGTGAGGGTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTAcc                                                                                                                                          <  1:434812/150‑1 (MQ=255)                     cTTGCCGCGTGACCTGGCGCATTTCGCCGACACTTACCTGGACGGTGCGGGCTGCTTTCTGGAAGCCCGTGAGGGTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCg                                                                                                                                >  2:671969/1‑150 (MQ=255)                      ttGCCGCGTGACCTGGCGCATTTCGCCGACACTTACCTGGACGGTGCGGGCTGCTTTCTGGAAGCCCGTGAGGGTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCgg                                                                                                                               <  2:339579/150‑1 (MQ=255)                      ttGCCGCGTGACCTGGCGCATTTCGCCGACACTTACCTGGACGGTGCGGGCTGCTTTCTGGAAGCCCGTGAGGGTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCgg                                                                                                                               >  1:6881/1‑150 (MQ=255)                      ttGCCGCGTGACCTGGCGCATTTCGCCGACACTTACCTGGACGGTGCGGGCTGCTTTCTGGAAGCCCGTGAGGGTGGGCGGCTGGTTGCGGTGATCGATTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCgg                                                                                                                               <  1:278472/150‑1 (MQ=255)                       tGCCGCGTGACCTGGCGCATTTCGCCGACACTTACCTGGACGGTGCGGGCTGCTTTCTGGAAGCCCGTGAGGGTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCggg                                                                                                                              <  2:462618/150‑1 (MQ=255)                         ccGCGTGACCTGGCGCATTTCGCCGACACTTACCTGGACGGTGCGGGCTGCTTTCTGGAAGCCCGTGAGGGTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTa                                                                                                                            <  1:58159/150‑1 (MQ=255)                           gcgTGACCTGGCGCATTTCGCCGACACTTACCTGGACGGTGCGGGCTGCTTTCTGGAAGCCCGTGAGGGTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGt                                                                                                                          >  1:318237/1‑150 (MQ=255)                              tGACCTGGCGCATTTCGCCGACACTTACCTGGACGGTGCGGGCTGCTTTCTGGAAGCCCGTGAGGGTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGa                                                                                                                       <  2:318237/150‑1 (MQ=255)                                   tGGCGCATTTCGCCGACACTTACCTGGACGGTGCGGGCTGCTTTCTGGAAGCCCGTGAGGGTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGtgg                                                                                                                  <  2:541905‑M2/150‑4 (MQ=255)                                    ggCGCATTTCGCCGACACTTACCTGGACGGTGCGGGCTGCTTTCTGGAAGCCCGTGAGGGTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAcctcgactacccgctctgcgcggtaatcaagctggg                                                                                                                 <  1:499464‑M1/150‑37 (MQ=255)                                              gCCGACACTTACCTGGACGGTGCGGGCTGCTTTCTGGAAGCCCGTGAGGGTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTc                                                                                                       <  1:121407/150‑1 (MQ=255)                                                          cTGGACGGTGCGGGCTGCTTTCTGGAAGCCCGTGAGGGTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAcctcgactacccgctctgcgcggtaatcaagctgg                                                                                                                  >  1:342683‑M1/1‑92 (MQ=255)                                                          cTGGACGGTGCGGGCTGCTTTCTGGAAGCCCGTGAGGGTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAcctcgactacccgctctgcgcggtaatcaagctgg                                                                                                                  <  2:342683‑M1/127‑36 (MQ=255)                                                                  tGCGGGCTGCTTTCTGGAAGCCCGTGAGGGTGGGCGGCTGGCTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAg                                                                                   <  2:583031/150‑1 (MQ=255)                                                                           ctTTCTGGAAGCCCGTGAGGGTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGc                                                                                                                                 <  1:439662/95‑1 (MQ=255)                                                                           ctTTCTGGAAGCCCGTGAGGGTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGc                                                                                                                                 >  2:439662/1‑95 (MQ=255)                                                                           ctTTCTGGAAGCCCGTGAGGGTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCt                                                                          <  1:658950/150‑1 (MQ=255)                                                                                  gAAGCCCGTGAGGGTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGgctgct                                                                   >  2:216431/1‑150 (MQ=255)                                                                                  gAAGCCCGTGAGGGTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGgctgct                                                                   <  2:75483/150‑1 (MQ=255)                                                                                    aGCCCGTGAGGGTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGGCtgctgc                                                                 >  2:705301/1‑150 (MQ=255)                                                                                          tGAGGGTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGGCTGCTGCCTTGtt                                                           >  2:807587/1‑150 (MQ=255)                                                                                              ggTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGAGTATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGGCTGCTGCCTTGTTTGGt                                                       <  1:732550/150‑1 (MQ=255)                                                                                                 gggCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAg                                                                                                                      >  1:78125/1‑84 (MQ=255)                                                                                                 gggCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAg                                                                                                                      <  2:78125/84‑1 (MQ=255)                                                                                                                       gTTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGGGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGGCTGCTGCCTTGTTTGGTGCCTTGCGCGAACGGGCGATGCAAg                              >  2:480064/1‑150 (MQ=255)                                                                                                                         tACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGGCTGCTGCCTTGTTTGGTGCCTTGCGCGAACGGGCGATGCAAGCg                            <  1:134386/150‑1 (MQ=255)                                                                                                                            tttcccTATGACCATCGCTTTGCCCAGCTTGATTACCACGCAGAGCGGGATGTCGAGGAAGTACGGCTGGTCGTGTTGCCGGCGTACCGAAGGCCTGGCCTGACTGCTCCCTTGTTTGGTGCGTTGCGCGAACGGGCGGTGCAAGCGGGc                         >  2:25452/4‑150 (MQ=255)                                                                                                                            ttGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGGCTGCTGCCTTGTTTGGTGCCTTGCGCGAACGGGCGATGCAAGCGGGc                         >  1:398603/1‑150 (MQ=255)                                                                                                                                ccTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGGCTGCTGCCTTGTTTGGTGCCTTGCGCGAACGGGCGATGCAAGCGGGCTTgg                     >  1:427163/1‑150 (MQ=255)                                                                                                                                 cTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGGCTGCTGCCTTGTTTGGTGCCTTGCGCGAACGGGCGATGCAAGCGGGCTTGGa                    >  1:738612/1‑150 (MQ=255)                                                                                                                                     gACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGGCTGCTGCCTTGTTTGGTGCCTTGCGCGAACGGGCGATGCAAGCGGGCTTGGACTGc                >  1:202800/1‑150 (MQ=255)                                                                                                                                       ccATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCCGGCATGGCCTGGCTGCTGCCTTGTTTGGt                                                       >  1:159859/1‑109 (MQ=255)                                                                                                                                       ccATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGGCTGCTGCCTTGTTTGGt                                                       <  2:159859/109‑1 (MQ=255)                                                                                                                                        cATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCt                                                                                          >  1:502865/1‑73 (MQ=255)                                                                                                                                        cATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCt                                                                                          <  2:502865/73‑1 (MQ=255)                                                                                                                                        cATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGGCTGCTGCCTTGTTTGGTGCCTTGCGCGAACGGGCGATGCAAGCGGGCTTGGACTGCCtt             >  2:562125/1‑150 (MQ=255)                                                                                                                                           cGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGGCTGCTGCCTTGTTTGGTGCCTTGCGCGAACGGGCGATGCAAGCGGGCTTGGACTGCCTTTAc          <  1:221869/150‑1 (MQ=255)                                                                                                                                             cTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGt                                                                                                         >  1:788427/1‑53 (MQ=255)                                                                                                                                             cTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGt                                                                                                         <  2:788427/53‑1 (MQ=255)                                                                                                                                             cTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGGCTGCTGCCTTGTTTGGTGCCTTGCGCGAACGGGCGATGCAAGCGGGCTTGGACTGCCTTTACtt        >  2:91962/1‑150 (MQ=255)                                                                                                                                               ttGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGGCTGCTGCCTTGTTTGGTGCCTTGCGCGAACGGGCGATGCAAGCGGGCTTGGACTGCCTTTACTTGc      <  2:6881/150‑1 (MQ=255)                                                                                                                                                 gCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGGCTGCTGCCTTGTTTGGTGCCTTGCGCGAACGGGCGATGCAAGCGGGCTTGGACt                  >  1:77620/1‑136 (MQ=255)                                                                                                                                                 gCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGGCTGCTGCCTTGTTTGGTGCCTTGCGCGAACGGGCGATGCAAGCGGGCTTGGACt                  <  2:77620/136‑1 (MQ=255)                                                                                                                                                  cccAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGtgggcaaagcgatggtcatagggcaagtaaccgatcaccgcaaccagccgcccaccctcacgggcttccagaaagcagcccgcaccgtccaggtaagtgtcggcgaaatgcgcc   <  1:499464‑M2/150‑115 (MQ=255)                                                                                                                                                  cccAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGGCTGCTGCCTTGTTTGGTGCCTTgcgc                                              <  2:117053/107‑1 (MQ=255)                                                                                                                                                  cccAGCTTGATTACCGCGCAGAGAGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGGCTGCTGCCTTGTTTGGTGCCTTgcgc                                              >  1:117053/1‑107 (MQ=255)                                                                                                                                                   ccAcctcgactacccgctctgcgcggtaatcaagctgggcaaagcgatggtcatagggcaagtaaccgatcaccgcaaccagccgcccaccctcacgggcttccagaaagcagcccgcaccgtccaggtaagtgtcggcgaaatgcgcca  <  2:541905‑M1/150‑148 (MQ=255)                                                                                                                                                   ccAGCTTGATTACCGCGCAGAGCGGGTAGTTGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGGCTGCTGCCTTGTTTGGTGCCTTGCGCGAACGGGCGATGCAAGCGGGCTTGGACTGCCTTTACTTGCATAc  >  2:801503/1‑150 (MQ=255)                                                                                                                                                   ccAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGtgggcaaagcgatggtcatagggcaagtaaccgatcaccgcaaccagccgcccaccctcacgggcttccagaaagcagcccgcaccgtccag                         <  2:342683‑M2/127‑93 (MQ=255)                                                                                                                                                   ccAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGtgggcaaagcgatggtcatagggcaagtaaccgatcaccgcaaccagccgcccaccctcacgggcttccagaaagcagcccgcaccgtccag                         >  1:342683‑M2/1‑35 (MQ=255)                                                                                                                                                    cAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGGCTGCTGCCTTGTTTGGTGCCTTGCGCGAACGGGCGATGCAAGCGGGCTTGGACTGCCTTTACTTGc      <  2:234877/145‑1 (MQ=255)                                                                                                                                                    cAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGGCTGCTGCCTTGTTTGGTGCCTTGCGCGAACGGGCGATGCAAGCGGGCTTGGACTGCCTTTACTTGc      >  1:234877/1‑145 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CCGATGCTCGCCAACGCACCCTTGCCGCGTGACCTGGCGCATTTCGCCGACACTTACCTGGACGGTGCGGGCTGCTTTCTGGAAGCCCGTGAGGGTGGGCGGCTGGTTGCGGTGATCGGTTACTTGCCCTATGACCATCGCTTTGCCCAGCTTGATTACCGCGCAGAGCGGGTAGTCGAGGTGGTGCGGCTGTTCGTGTTGCCGGCCTACCGCAGGCATGGCCTGGCTGCTGCCTTGTTTGGTGCCTTGCGCGAACGGGCGATGCAAGCGGGCTTGGACTGCCTTTACTTGCATAC  >  NC_002947/2761682‑2761977

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.